DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and Snrnp35

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001014149.1 Gene:Snrnp35 / 360803 RGDID:1310724 Length:244 Species:Rattus norvegicus


Alignment Length:87 Identity:25/87 - (28%)
Similarity:44/87 - (50%) Gaps:9/87 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWL 162
            :||..|:::.:.::||:.|:.:|:|...|:|||..|..||||.|:.:.::.....|....:|..:
  Rat    53 LFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVI 117

  Fly   163 GSRSI-------RT--NWATRK 175
            ....|       ||  .|..|:
  Rat   118 DQHEIFVDYELERTLRGWIPRR 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 25/87 (29%)
RRM2_TIA1_like 97..171 CDD:409789 23/81 (28%)
RRM3_TIA1_like 202..276 CDD:409790
Snrnp35NP_001014149.1 RRM_snRNP35 47..137 CDD:409683 24/83 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..244
Blue background indicates that the domain is not in the aligned region.

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