Protein Alignment CG34354 and Secp43

DIOPT Version :10

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Alignment Length: 378
• Identity: 89/378 - (23%)
• Similarity: 143/378 - (37%)
• Gaps: 124/378 - (32%)

  Fly    98 IFVGDLSAEIETQQLKDAFTPFGE-ISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQW 161
            :::|.|.:.:....:..||...|| .:..|::|:..|.:..||.||:|:....|..|:..:||:.
  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKP 72

  Fly   162 L-GSRSI---RTNWATR--KPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEE 220
            : |:..|   |.|.|:.  |.|..:.:.                   :|:.|.    ||..:::.
  Fly    73 IPGTNPIVRFRLNSASNSYKLPGNEREF-------------------SVWVGD----LSSDVDDY 114

  Fly   221 ILQKTF-SPYGTIQEIRVFKD-----KGYAFVRFSTKEAATHAIVAVNN-TEINQQPVKCAWGKE 278
            .|.|.| |.:.:|:..:|..|     |||.||||..::....|:..:|. ..:..:|:|..
  Fly   115 QLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKIC---- 175

  Fly   279 SGDPNHMSAIAGGALAQG---FPFGSAAAAAAAAAYGQQVAGYWYPPAPTYPAAAPASALQPGQF 340
            :..|...|.: |||:.:|   :.:||...||....|.|     :|.|..||           .|.
  Fly   176 NAVPKPKSEL-GGAVGEGNTNYGYGSGMTAAGGTDYSQ-----YYDPTSTY-----------WQG 223

  Fly   341 LQGMQGFTYGQFAGYQQAGYMGMGVQLPGTWQSVPPQPQLASAAAATAPQITQSVGSALPQAAGV 405
            .|..||:       |:||                                     |:::..||..
  Fly   224 YQAWQGY-------YEQA-------------------------------------GASITDAAAY 244

  Fly   406 VAYPMQQFQVSPQ-LAE--DEWLAPSLLVXLPXGMAMYPTQQHQQQQQQQQQQ 455
            ....|.|...:|| ||:  :.|.|                |:..|.:||||||
  Fly   245 YQQAMSQSHSNPQTLAQHAEAWSA----------------QRSAQYEQQQQQQ 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	PABP-1234	<90..420	CDD:130689	77/339 (23%)
		RRM2_TIA1_like	97..171	CDD:409789	21/77 (27%)
		RRM3_TIA1_like	202..276	CDD:409790	22/80 (28%)
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	23/81 (28%)
		RRM2_SECp43_like	99..178	CDD:409781	22/105 (21%)
		Trnau1ap	210..330	CDD:465438	32/148 (22%)