Protein Alignment CG34354 and srsf5a

DIOPT Version :10

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_957161.1
• Gene: srsf5a / 335396
• ZFINID: ZDB-GENE-030131-7336
• Length: 259
• Species: Danio rerio
• Alignment Length: 190
• Identity: 39/190 - (20%)
• Similarity: 78/190 - (41%)
• Gaps: 30/190 - (15%)

  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWL 162
            :|:|.||.....:.::..|..:|.|.:..:        ..|:|||.|....:|:.|:..:||:.|
Zfish     6 VFIGRLSPHARERDVEKFFKGYGRIREINL--------KNGFGFVEFDDYRDADDAVYELNGKEL 62

  Fly   163 GSRSIRTNWA-TRKPPATKADMNAKPLTFDEVYNQSSP----------TNCTVYCGGINGALSGF 216
            .|..:....| :|:.......|..:.......|.||..          |...:....::..:|..
Zfish    63 CSERVTIEHARSRRGRGGGPGMGGRFSPRFGGYRQSRSGGSRYGPPVRTEHRIIVENLSSRISWQ 127

  Fly   217 LNEEILQK----TFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
            ..:::::|    ||     :...|..|::|  .|.|::.....:||..::.|::|.:.:|
Zfish   128 DLKDLMRKVGEVTF-----VDAHRTKKNEG--VVEFASHSDMKNAIEKLDGTDLNGRKLK 180

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	PABP-1234	<90..420	CDD:130689	39/190 (21%)
		RRM2_TIA1_like	97..171	CDD:409789	18/72 (25%)
		RRM3_TIA1_like	202..276	CDD:409790	14/75 (19%)
srsf5a	NP_957161.1	RRM1_SRSF4_like	5..72	CDD:409774	18/73 (25%)
		RRM2_SRSF4_like	113..184	CDD:410012	14/75 (19%)