DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and HNRNPD

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_112738.1 Gene:HNRNPD / 3184 HGNCID:5036 Length:355 Species:Homo sapiens


Alignment Length:381 Identity:89/381 - (23%)
Similarity:146/381 - (38%) Gaps:102/381 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 APTIAMGAPQITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQM 75
            |.|.|:|      |.....|..::|....|||||.:.......||:    .|.:..|.:.:..::
Human    14 AATAAVG------GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTAS----GGTEGGSAESEGAKI 68

  Fly    76 SQQQQQQQQQLVGNNSKP----------EQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRD 130
            ...:.::.:.  .:||.|          |::.:|:|.||.:...:.|||.|:.|||:.||.:..|
Human    69 DASKNEEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLD 131

  Fly   131 PQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYN 195
            |.|.:|:|:|||.| |:||:...:       :..:..:.|.....|...||....:|:.      
Human   132 PITGRSRGFGFVLF-KESESVDKV-------MDQKEHKLNGKVIDPKRAKAMKTKEPVK------ 182

  Fly   196 QSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEI------RVFKDKGYAFVRFSTKEAA 254
                   .::.||    ||....||.:::.|..:|.::.|      :..|.:|:.|:.|..:|..
Human   183 -------KIFVGG----LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236

  Fly   255 T-------HAI--------VAVNNTEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFGSAAA 304
            .       |.:        ||::..:..||.   .||...|       .||.|..:|        
Human   237 KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ---QWGSRGG-------FAGRARGRG-------- 283

  Fly   305 AAAAAAYGQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGY 360
            ...:..:.|..:.||......|           |...||     ||.:.||...||
Human   284 GGPSQNWNQGYSNYWNQGYGNY-----------GYNSQG-----YGGYGGYDYTGY 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 73/302 (24%)
RRM2_TIA1_like 97..171 CDD:409789 25/73 (34%)
RRM3_TIA1_like 202..276 CDD:409790 19/94 (20%)
HNRNPDNP_112738.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..92 19/89 (21%)
CBFNT <60..78 CDD:311868 1/17 (6%)
RRM1_hnRNPD 99..172 CDD:410150 27/80 (34%)
RRM2_hnRNPD 183..257 CDD:241027 15/77 (19%)

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