Protein Alignment CG34354 and ssx

DIOPT Version :9

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 506
• Identity: 109/506 - (21%)
• Similarity: 170/506 - (33%)
• Gaps: 198/506 - (39%)

  Fly    59 QHNG--QQQHSQQQQQQQMSQQQQQQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGE 121
            :|:|  :|.|||..:....|..||||.||:    .:....::.:..|..::..::|.:.|:..|.
  Fly    58 EHSGDEEQHHSQDNEGNDNSAGQQQQMQQV----DRTSATNLIINYLPQDMTDRELYNLFSGCGP 118

  Fly   122 ISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAK 186
            |:.|:::||.:|..|.|||||.:..:|::|.||..:||.::.::.::.::|.....:.|
  Fly   119 INTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIK------ 177

  Fly   187 PLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDK------GYAF 245
                        .||..|    ||  ||..:|:::|.:.|||||.|.:..:.:||      |.||
  Fly   178 ------------DTNLYV----IN--LSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAF 224

  Fly   246 VRFSTKEAATHAIVAVNNT--EINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFGSAAAAAAA 308
            ||::.:|.|..||.|:|||  |...||:.....:|.|                        .|.|
  Fly   225 VRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHG------------------------KAKA 265

  Fly   309 AAYGQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGMGVQLPGTWQS 373
            |.:..|:.|                                |...|       |.|
  Fly   266 AQFMAQIGG--------------------------------GNGGG-------GGG--------- 282

  Fly   374 VPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPMQQFQVSPQLAEDEWLAPSLLVXLPXGMA 438
             ||.                                               :.|        |..
  Fly   283 -PPH-----------------------------------------------MGP--------GGP 291

  Fly   439 MYPTQQHQQQQQQQQQQQMLQQQHEQQTSGEYVKEPPYQTQQLQQLQHHQLQQQHSHNQHQQQQH 503
            |:|...|............:               ||:         |||.|..|.|.||..|.|
  Fly   292 MHPPHHHNNHHHNNHHNPHM---------------PPH---------HHQPQHPHQHPQHHPQLH 332

  Fly   504 YIHQLYYPSHWVQQQQQQQQQVANNEQ-------QPQQQQQQPPVAQVYGM 547
            :: |.::|::.............||..       .|...||..|:....||
  Fly   333 HM-QHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGM 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	RRM2_TIA1_like	97..171	CDD:240799	21/73 (29%)
		RRM3_TIA1_like	202..278	CDD:240800	31/83 (37%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	22/79 (28%)
		RRM_SF	179..257	CDD:302621	33/83 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910