Protein Alignment CG34354 and elav

DIOPT Version :9

• Sequence 1: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Sequence 2: NP_001245447.1
• Gene: elav / 31000
• FlyBaseID: FBgn0260400
• Length: 483
• Species: Drosophila melanogaster
• Alignment Length: 478
• Identity: 125/478 - (26%)
• Similarity: 177/478 - (37%)
• Gaps: 160/478 - (33%)

  Fly     3 TMSTLMM-PAPTIAMGAPQITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQ-- 64
            |.:.||. .|...|:.|......|          :..|||.|||||.|||.|..|.||...||
  Fly    16 TQAQLMQSAAAAAAVAATNAAAAP----------VQNAAAVAAAAQLQQQQVQQAILQVQQQQTQ 70

  Fly    65 -----------QHSQQQQQ----QQMSQQQQQQQ----------QQLV----------------- 87
                       |..|||||    ||...||||||          ||.|
  Fly    71 QAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGS 135

  Fly    88 ----GNNSKPE-QFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRD-------------PQTL 134
                |:|...| :.::.|..|...:...:::..|:..|||...:::||             |...
  Fly   136 GSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG 200

  Fly   135 KSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSP 199
            :|.|||||::|:..:||.|:..:||..|.:::|:.::|.....|.|
  Fly   201 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK------------------- 246

  Fly   200 TNCTVYCGGINGALSGF---LNEEILQKTFSPYGTIQEIRVFKD-------KGYAFVRFSTKEAA 254
                    |.|..:||.   :.::.|:..|:|:|.|...|:.::       ||..|:||..:|.|
  Fly   247 --------GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEA 303

  Fly   255 THAIVAVNNTE------------------------------INQQPVKCAWGKESGDPN----HM 285
            |.||:|:|.|.                              :|.|.|:...|......|    ..
  Fly   304 TRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARF 368

  Fly   286 SAIAGGALAQGFPFGSAAAAAAAAAYGQQVAG----YWYPPAPTYPAAA------PASALQPGQF 340
            |.:||..|....|.|..||||||........|    :.|..||....||      |..|:|..:.
  Fly   369 SPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKI 433

  Fly   341 LQGMQGFTYGQFAGYQQAGYMGM 363
            ::..   |..|..||   |::.|
  Fly   434 VKDP---TTNQCKGY---GFVSM 450

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG34354	NP_001097953.2	RRM2_TIA1_like	97..171	CDD:240799	23/86 (27%)
		RRM3_TIA1_like	202..278	CDD:240800	27/115 (23%)
elav	NP_001245447.1	ELAV_HUD_SF	146..483	CDD:273741	82/338 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910