DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34354 and Rbm3

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_058089.2 Gene:Rbm3 / 19652 MGIID:1099460 Length:154 Species:Mus musculus


Alignment Length:79 Identity:33/79 - (41%)
Similarity:50/79 - (63%) Gaps:0/79 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 EQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMN 158
            |:..:|||.|:...:.|.|:|.|:.||.||:..||:|.:|.:|:|:||::|.....|..|:.|||
Mouse     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68

  Fly   159 GQWLGSRSIRTNWA 172
            |:.|..|.||.:.|
Mouse    69 GESLDGRQIRVDHA 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 33/79 (42%)
RRM2_TIA1_like 97..171 CDD:409789 31/73 (42%)
RRM3_TIA1_like 202..276 CDD:409790
Rbm3NP_058089.2 RRM_CIRBP_RBM3 6..85 CDD:409883 32/77 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.