DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34354 and R06C1.4

DIOPT Version :9

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_493029.1 Gene:R06C1.4 / 173076 WormBaseID:WBGene00011059 Length:84 Species:Caenorhabditis elegans


Alignment Length:79 Identity:21/79 - (26%)
Similarity:48/79 - (60%) Gaps:0/79 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 FHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQ 160
            |.::||::..:...:::.:.|...|.:::.|:|.|.:|.:.:|:.||.|.:::.|:.|:..:||.
 Worm     6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGV 70

  Fly   161 WLGSRSIRTNWATR 174
            ....|::|.|:|.:
 Worm    71 AFNGRNLRVNYANK 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 18/73 (25%)
RRM3_TIA1_like 202..278 CDD:240800
R06C1.4NP_493029.1 RRM_SF 9..84 CDD:388407 20/74 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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