DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34354 and Hnrnpd

DIOPT Version :10

Sequence 1:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001070733.1 Gene:Hnrnpd / 11991 MGIID:101947 Length:355 Species:Mus musculus


Alignment Length:373 Identity:86/373 - (23%)
Similarity:142/373 - (38%) Gaps:112/373 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 AAAAAAA----AQQQQQSVTAAHLQ----------------HNGQQQHSQQQQQQQMSQQQQQQQ 83
            ||||.||    |.:|:.::.||..|                ..|.:..|.:.:..::...:.::.
Mouse    12 AAAATAAVGGSAGEQEGAMVAAAAQGPAAAAGSGSGGGGSAAGGTEGGSAEAEGAKIDASKNEED 76

  Fly    84 QQLVGNNSKP----------EQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKG 138
            :.  .:||.|          |::.:|:|.||.:...:.|||.|:.|||:.||.:..||.|.:|:|
Mouse    77 EG--HSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139

  Fly   139 YGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCT 203
            :|||.| |:||:...:       :..:..:.|.....|...||....:|:.             .
Mouse   140 FGFVLF-KESESVDKV-------MDQKEHKLNGKVIDPKRAKAMKTKEPVK-------------K 183

  Fly   204 VYCGGINGALSGFLNEEILQKTFSPYGTIQEI------RVFKDKGYAFVRFSTKEAAT------- 255
            ::.||    ||....||.:::.|..:|.::.|      :..|.:|:.|:.|..:|...       
Mouse   184 IFVGG----LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244

  Fly   256 HAI--------VAVNNTEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFGSAAAAAAAAAYG 312
            |.:        ||::..:..||.   .||...|       .||.|..:|        ...:..:.
Mouse   245 HNVGLSKCEIKVAMSKEQYQQQQ---QWGSRGG-------FAGRARGRG--------GGPSQNWN 291

  Fly   313 QQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGY 360
            |..:.||......|           |...||     ||.:.||...||
Mouse   292 QGYSNYWNQGYGNY-----------GYNSQG-----YGGYGGYDYTGY 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 73/302 (24%)
RRM2_TIA1_like 97..171 CDD:409789 25/73 (34%)
RRM3_TIA1_like 202..276 CDD:409790 19/94 (20%)
HnrnpdNP_001070733.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..91 16/80 (20%)
CBFNT <60..78 CDD:311868 1/17 (6%)
RRM1_hnRNPD 99..172 CDD:410150 27/80 (34%)
RRM2_hnRNPD 183..257 CDD:241027 15/77 (19%)

Return to query results.
Submit another query.