DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and LGR5

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_003658.1 Gene:LGR5 / 8549 HGNCID:4504 Length:907 Species:Homo sapiens


Alignment Length:899 Identity:218/899 - (24%)
Similarity:316/899 - (35%) Gaps:303/899 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 CNTTAQCVPQRANCDG----SVDCDDAS-DEVNCVNEVDAKYWDHLYRKQPFGRHDNLRIGECLW 155
            |.|...|.|     ||    .|||.|.. .|:.....|...|.|                   |.
Human    34 CPTHCHCEP-----DGRMLLRVDCSDLGLSELPSNLSVFTSYLD-------------------LS 74

  Fly   156 PNENFSCPCRGDEILCRFQQLTDIPERLPQ-HDLATLDLTGNNFETIHETFFSELPDVDSLVLKF 219
            .| |.|             ||  :|..||. ..|..|.|.||....|.:..|:.|..:..|:|:.
Human    75 MN-NIS-------------QL--LPNPLPSLRFLEELRLAGNALTYIPKGAFTGLYSLKVLMLQN 123

  Fly   220 CSIREIASHAFDRLAD----------------------NPLRTLYMDDNKLPHLPEHFFPEGNQL 262
            ..:|.:.:.|...|..                      :.||.|::|||.|..:|...|...:.|
Human   124 NQLRHVPTEALQNLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTEIPVQAFRSLSAL 188

  Fly   263 SILILARNHLHHLKRSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDR 327
            ..:.||.|.:||:....|.||..|..|.|..|||.:...:.|..|.:||.|.||.|:|     |.
Human   189 QAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNL-----DE 248

  Fly   328 FP---RTLLNLHTLSLAYNQIEDIAANTF-------------------------PFPRLRYLFLA 364
            ||   |||.||..|....|.|..|....|                         ..|.||.|.|.
Human   249 FPTAIRTLSNLKELGFHSNNIRSIPEKAFVGNPSLITIHFYDNPIQFVGRSAFQHLPELRTLTLN 313

  Fly   365 G-NRLSHIRD---------------------ETFCN-LSNLQGLHLNENRIEGFDLEAFA-CLK- 404
            | ::::...|                     :|.|| |.|||.|.|:.|.:|  ||.:|: |.| 
Human   314 GASQITEFPDLTGTANLESLTLTGAQISSLPQTVCNQLPNLQVLDLSYNLLE--DLPSFSVCQKL 376

  Fly   405 ----------------------NLSSLLLTGNR--------FQTLDSRVLKNLTS---------- 429
                                  :|.||.|..|:        |.||.|.:..:|:|          
Human   377 QKIDLRHNEIYEIKVDTFQQLLSLRSLNLAWNKIAIIHPNAFSTLPSLIKLDLSSNLLSSFPITG 441

  Fly   430 --------------------------LDYIYFSWFHLCSA------------------------- 443
                                      |..|...:.:.|.|                         
Human   442 LHGLTHLKLTGNHALQSLISSENFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDNSSMDDL 506

  Fly   444 ----------------------------AMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIA 480
                                        |::...|.|.........||||..::|..||.:|.:|
Human   507 HKKDAGMFQAQDERDLEDFLLDFEEDLKALHSVQCSPSPGPFKPCEHLLDGWLIRIGVWTIAVLA 571

  Fly   481 VVGNLLVLLGRYFYKSRSNVEHS-LYLRH-------LAASDFLMGIYLTLIACADISFRGEYIKY 537
            :..|.||         .|.|..| ||:..       :||.:.|.|:...::|..|....|.:.::
Human   572 LTCNALV---------TSTVFRSPLYISPIKLLIGVIAAVNMLTGVSSAVLAGVDAFTFGSFARH 627

  Fly   538 EETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLK-----PRDTEKVRIVLRLLLL 597
            ...|.:...|...||||.|:.:||..||||...:|..||....|     |..:.||.|:|..|| 
Human   628 GAWWENGVGCHVIGFLSIFASESSVFLLTLAALERGFSVKYSAKFETKAPFSSLKVIILLCALL- 691

  Fly   598 WGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLSLIFILFSYI 662
               :..:||.|||     |...||.:.:||.|...:|...|:   .:..||:|:|..:.:..:|.
Human   692 ---ALTMAAVPLL-----GGSKYGASPLCLPLPFGEPSTMGY---MVALILLNSLCFLMMTIAYT 745

  Fly   663 RMLQAIRDSGGGMRSTHSGRENV----VATRFAIIVTTDCACWLPIIVVKLAALSGCE-ISPDLY 722
            : |....|.|        ..||:    :....|:::.|:|....|:..:..::|.... |||::.
Human   746 K-LYCNLDKG--------DLENIWDCSMVKHIALLLFTNCILNCPVAFLSFSSLINLTFISPEVI 801

  Fly   723 AWLAVLVLPVNSALNPVLYTLTTAAFKQQL-----RRYCHTL---PSCSLVNNE 768
            .::.::|:|:.:.|||:||.|....||:.|     :.|..|.   ||...:|::
Human   802 KFILLVVVPLPACLNPLLYILFNPHFKEDLVSLRKQTYVWTRSKHPSLMSINSD 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011 11/32 (34%)
LRR 167..>430 CDD:443914 98/404 (24%)
leucine-rich repeat 188..211 CDD:275380 8/22 (36%)
leucine-rich repeat 212..235 CDD:275380 5/22 (23%)
leucine-rich repeat 238..261 CDD:275380 9/22 (41%)
leucine-rich repeat 262..285 CDD:275380 9/22 (41%)
leucine-rich repeat 286..309 CDD:275380 8/22 (36%)
leucine-rich repeat 310..334 CDD:275380 13/26 (50%)
leucine-rich repeat 335..357 CDD:275380 6/46 (13%)
leucine-rich repeat 358..381 CDD:275380 10/45 (22%)
leucine-rich repeat 382..405 CDD:275380 11/46 (24%)
leucine-rich repeat 406..427 CDD:275380 9/28 (32%)
7tmA_Relaxin_R 467..752 CDD:320265 85/302 (28%)
TM helix 1 468..494 CDD:320265 8/25 (32%)
TM helix 2 502..527 CDD:320265 8/32 (25%)
TM helix 3 547..577 CDD:320265 14/29 (48%)
TM helix 4 588..610 CDD:320265 8/21 (38%)
TM helix 5 638..667 CDD:320265 7/28 (25%)
TM helix 6 681..711 CDD:320265 6/33 (18%)
TM helix 7 720..745 CDD:320265 8/24 (33%)
LGR5NP_003658.1 LRRNT 33..65 CDD:396168 11/35 (31%)
leucine-rich repeat 68..91 CDD:275380 11/57 (19%)
LRR 92..477 CDD:443914 95/391 (24%)
leucine-rich repeat 92..115 CDD:275380 8/22 (36%)
leucine-rich repeat 116..139 CDD:275380 5/22 (23%)
leucine-rich repeat 140..163 CDD:275380 0/22 (0%)
leucine-rich repeat 164..187 CDD:275380 9/22 (41%)
leucine-rich repeat 188..211 CDD:275380 9/22 (41%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 236..258 CDD:275380 13/26 (50%)
leucine-rich repeat 259..282 CDD:275380 6/22 (27%)
leucine-rich repeat 283..304 CDD:275380 0/20 (0%)
leucine-rich repeat 307..353 CDD:275378 10/45 (22%)
leucine-rich repeat 354..375 CDD:275378 10/22 (45%)
leucine-rich repeat 376..389 CDD:275378 0/12 (0%)
leucine-rich repeat 400..423 CDD:275378 8/22 (36%)
leucine-rich repeat 445..459 CDD:275378 0/13 (0%)
7tmA_LGR5 558..831 CDD:320485 85/302 (28%)
TM helix 1 559..585 CDD:320485 10/34 (29%)
TM helix 2 592..617 CDD:320485 5/24 (21%)
TM helix 3 637..667 CDD:320485 14/29 (48%)
TM helix 4 679..701 CDD:320485 9/25 (36%)
TM helix 5 721..750 CDD:320485 7/32 (22%)
TM helix 6 759..789 CDD:320485 4/29 (14%)
TM helix 7 799..824 CDD:320485 8/24 (33%)

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