DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and rxfp2a

DIOPT Version :9

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001315313.1 Gene:rxfp2a / 792884 ZFINID:ZDB-GENE-040426-1225 Length:754 Species:Danio rerio


Alignment Length:735 Identity:236/735 - (32%)
Similarity:366/735 - (49%) Gaps:52/735 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 CPGGYFHCNTTAQCVPQRANCDGSVDCDDASDEVNC-VNEVDAKYWDHLYRK-QPFGRHDNLRIG 151
            ||.|.|.|...:.|:||...|:|..||.:.:||.:| .|...|..:|...:| :|    .:|   
Zfish    42 CPLGQFPCGNMSVCLPQVLQCNGHKDCKNGADEEHCGDNSGWADIFDRTIKKAEP----QDL--- 99

  Fly   152 ECLWPNENF------SCPCRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHETFFSELP 210
                ||:.:      ||.|:..|:.|....|..:|  :...::..|.|..|....:.:..||:..
Zfish   100 ----PNDCYLQQYPQSCSCKKTEVECVDVNLHVVP--ILSSNVTWLSLKNNRIRNLDDYIFSKYT 158

  Fly   211 DVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLHHL 275
            .:..|.|:...|..::|.||.||.  .|:.|::..|.:.:|....|.:.::|..|:|..|.|.|:
Zfish   159 QMQRLFLQNNIIETVSSRAFSRLF--TLQRLFLSQNNITYLGPGVFRDLHKLDWLVLDHNPLKHI 221

  Fly   276 KRSDFLNLQKLQELDLRG---NRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDRFPRTLLNLHT 337
            .|..|:.|:.|..|.:..   .|:.|  :.:...:|.|..|...||.::.|:.... .|...|..
Zfish   222 TRDTFIGLRSLTYLSMVNVSLMRLPN--SSLCQHMPLLTWLDFAENDVELLNYSTL-MTCTELTV 283

  Fly   338 LSLAYNQIEDIAANTF-PFPRLRYLFLAGNRLSHIRDETFCNLSNLQGLHLNENRIEGFDLEAFA 401
            |:...|.|:.:..||| ....|..|.|:.||:|.:...||.:|..|:.|:::.|.:.......|.
Zfish   284 LTFHDNNIKTLPENTFHSLGSLAELDLSCNRISKLPKNTFKSLKYLKKLNISHNPLLHIHTGHFD 348

  Fly   402 CLKNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWFHLCSAAMNVRVCDPHGDGISSKLHLLDN 466
            .|..|.||.|.|.....:.:::...:.:|.:|||..|..||.|.:||.|.|:.|||||...||.:
Zfish   349 HLVQLQSLSLEGIEIPNITTKMFLPMGNLSHIYFKDFQYCSYAPHVRKCKPNTDGISSVEDLLAS 413

  Fly   467 QILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIACADISFR 531
            .:||.||||||.|...|||.|:..|.|.::.:|: |:..::.|..:|.|||:||..:...|:.||
Zfish   414 LVLRVSVWVMAFITCFGNLFVIGMRSFIRAENNL-HAACIKVLCFADCLMGVYLFFLGIFDVKFR 477

  Fly   532 GEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLL 596
            |||.:....|..|..|...|||:..|.:.|.||||.:|.::.:.:..|.......|::.||.|..
Zfish   478 GEYNRNALIWMDSVECRTIGFLAMLSSEVSVLLLTYLTLEKFLVIVFPFSHLRPAKLQTVLILAF 542

  Fly   597 LWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLH---IHDPYAKGWEYSALLFILVNTLSLIFIL 658
            :|.:.|.:||.|||....|| ::||.||||..||   :..|.|||  ||..:|:.:|.::.:.|:
Zfish   543 IWFLGFVIAAVPLLNEDLFG-NYYGRNGVCFPLHSDRLEKPTAKG--YSTGIFLGLNLVAFLVIV 604

  Fly   659 FSYIRMLQAIRDSGGGMRSTHS--GRENVVATRFAIIVTTDCACWLPIIVVKLAALSGCEISPDL 721
            .||..|..:|..:|.......|  .::..||.||..||.:|..||:||.:||..:|...||...:
Zfish   605 ISYSSMFCSIYKTGINATDVRSRLHKDVAVANRFFFIVFSDALCWIPIFLVKTLSLMKVEIPGTI 669

  Fly   722 YAWLAVLVLPVNSALNPVLYTLTTAAFKQQL--------RRYC-----HTLPSCSLVNNETRSQT 773
            .:|:.:.:||:||||||:||||||:.|::|:        ||..     .::.|.::....:|:..
Zfish   670 NSWVVIFILPINSALNPILYTLTTSFFREQVELLLCRWQRRSATKKDRKSVTSSTIYMETSRNPE 734

  Fly   774 QTAYESGLSVSLAHLGGGVG 793
            ..|..|...:|||.:....|
Zfish   735 YPAKNSLPRLSLADMDNQYG 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:278486 14/34 (41%)
LRR_RI <184..397 CDD:238064 57/216 (26%)
LRR_8 188..248 CDD:290566 16/59 (27%)
leucine-rich repeat 188..211 CDD:275380 5/22 (23%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 238..261 CDD:275380 5/22 (23%)
LRR_8 261..320 CDD:290566 18/61 (30%)
leucine-rich repeat 262..285 CDD:275380 9/22 (41%)
LRR_4 284..325 CDD:289563 10/43 (23%)
leucine-rich repeat 286..309 CDD:275380 4/25 (16%)
LRR_4 308..348 CDD:289563 11/39 (28%)
leucine-rich repeat 310..334 CDD:275380 6/23 (26%)
leucine-rich repeat 335..357 CDD:275380 7/22 (32%)
LRR_8 356..416 CDD:290566 19/59 (32%)
leucine-rich repeat 358..381 CDD:275380 9/22 (41%)
LRR_4 381..421 CDD:289563 10/39 (26%)
leucine-rich repeat 382..405 CDD:275380 5/22 (23%)
leucine-rich repeat 406..427 CDD:275380 5/20 (25%)
7tm_1 483..741 CDD:278431 96/262 (37%)
rxfp2aNP_001315313.1 LDLa 42..77 CDD:238060 14/34 (41%)
leucine-rich repeat 136..159 CDD:275380 5/22 (23%)
LRR_8 158..218 CDD:290566 17/61 (28%)
leucine-rich repeat 160..183 CDD:275380 8/24 (33%)
leucine-rich repeat 184..207 CDD:275380 5/22 (23%)
leucine-rich repeat 208..231 CDD:275380 9/22 (41%)
leucine-rich repeat 232..256 CDD:275380 4/25 (16%)
LRR_8 255..315 CDD:290566 18/60 (30%)
leucine-rich repeat 257..280 CDD:275380 6/23 (26%)
leucine-rich repeat 281..304 CDD:275380 7/22 (32%)
LRR_8 304..360 CDD:290566 18/55 (33%)
leucine-rich repeat 305..328 CDD:275380 9/22 (41%)
leucine-rich repeat 329..352 CDD:275380 5/22 (23%)
leucine-rich repeat 353..371 CDD:275380 5/17 (29%)
7tm_4 422..>647 CDD:304433 82/228 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D256258at33208
OrthoFinder 1 1.000 - - FOG0002061
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101648
Panther 1 1.100 - - O PTHR24372
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1524
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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