DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and rxfp2a

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:XP_068079928.2 Gene:rxfp2a / 792884 ZFINID:ZDB-GENE-040426-1225 Length:755 Species:Danio rerio


Alignment Length:735 Identity:236/735 - (32%)
Similarity:366/735 - (49%) Gaps:52/735 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 CPGGYFHCNTTAQCVPQRANCDGSVDCDDASDEVNC-VNEVDAKYWDHLYRK-QPFGRHDNLRIG 151
            ||.|.|.|...:.|:||...|:|..||.:.:||.:| .|...|..:|...:| :|    .:|   
Zfish    43 CPLGQFPCGNMSVCLPQVLQCNGHKDCKNGADEEHCGDNSGWADIFDRTIKKAEP----QDL--- 100

  Fly   152 ECLWPNENF------SCPCRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHETFFSELP 210
                ||:.:      ||.|:..|:.|....|..:|  :...::..|.|..|....:.:..||:..
Zfish   101 ----PNDCYLQQYPQSCSCKKTEVECVDVNLHVVP--ILSSNVTWLSLKNNRIRNLDDYIFSKYT 159

  Fly   211 DVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLHHL 275
            .:..|.|:...|..::|.||.||.  .|:.|::..|.:.:|....|.:.::|..|:|..|.|.|:
Zfish   160 QMQRLFLQNNIIETVSSRAFSRLF--TLQRLFLSQNNITYLGPGVFRDLHKLDWLVLDHNPLKHI 222

  Fly   276 KRSDFLNLQKLQELDLRG---NRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDRFPRTLLNLHT 337
            .|..|:.|:.|..|.:..   .|:.|  :.:...:|.|..|...||.::.|:.... .|...|..
Zfish   223 TRDTFIGLRSLTYLSMVNVSLMRLPN--SSLCQHMPLLTWLDFAENDVELLNYSTL-MTCTELTV 284

  Fly   338 LSLAYNQIEDIAANTF-PFPRLRYLFLAGNRLSHIRDETFCNLSNLQGLHLNENRIEGFDLEAFA 401
            |:...|.|:.:..||| ....|..|.|:.||:|.:...||.:|..|:.|:::.|.:.......|.
Zfish   285 LTFHDNNIKTLPENTFHSLGSLAELDLSCNRISKLPKNTFKSLKYLKKLNISHNPLLHIHTGHFD 349

  Fly   402 CLKNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWFHLCSAAMNVRVCDPHGDGISSKLHLLDN 466
            .|..|.||.|.|.....:.:::...:.:|.:|||..|..||.|.:||.|.|:.|||||...||.:
Zfish   350 HLVQLQSLSLEGIEIPNITTKMFLPMGNLSHIYFKDFQYCSYAPHVRKCKPNTDGISSVEDLLAS 414

  Fly   467 QILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIACADISFR 531
            .:||.||||||.|...|||.|:..|.|.::.:|: |:..::.|..:|.|||:||..:...|:.||
Zfish   415 LVLRVSVWVMAFITCFGNLFVIGMRSFIRAENNL-HAACIKVLCFADCLMGVYLFFLGIFDVKFR 478

  Fly   532 GEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLL 596
            |||.:....|..|..|...|||:..|.:.|.||||.:|.::.:.:..|.......|::.||.|..
Zfish   479 GEYNRNALIWMDSVECRTIGFLAMLSSEVSVLLLTYLTLEKFLVIVFPFSHLRPAKLQTVLILAF 543

  Fly   597 LWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLH---IHDPYAKGWEYSALLFILVNTLSLIFIL 658
            :|.:.|.:||.|||....|| ::||.||||..||   :..|.|||  ||..:|:.:|.::.:.|:
Zfish   544 IWFLGFVIAAVPLLNEDLFG-NYYGRNGVCFPLHSDRLEKPTAKG--YSTGIFLGLNLVAFLVIV 605

  Fly   659 FSYIRMLQAIRDSGGGMRSTHS--GRENVVATRFAIIVTTDCACWLPIIVVKLAALSGCEISPDL 721
            .||..|..:|..:|.......|  .::..||.||..||.:|..||:||.:||..:|...||...:
Zfish   606 ISYSSMFCSIYKTGINATDVRSRLHKDVAVANRFFFIVFSDALCWIPIFLVKTLSLMKVEIPGTI 670

  Fly   722 YAWLAVLVLPVNSALNPVLYTLTTAAFKQQL--------RRYC-----HTLPSCSLVNNETRSQT 773
            .:|:.:.:||:||||||:||||||:.|::|:        ||..     .::.|.::....:|:..
Zfish   671 NSWVVIFILPINSALNPILYTLTTSFFREQVELLLCRWQRRSATKKDRKSVTSSTIYMETSRNPE 735

  Fly   774 QTAYESGLSVSLAHLGGGVG 793
            ..|..|...:|||.:....|
Zfish   736 YPAKNSLPRLSLADMDNQYG 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011 14/34 (41%)
LRR 167..>430 CDD:443914 68/266 (26%)
leucine-rich repeat 188..211 CDD:275380 5/22 (23%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 238..261 CDD:275380 5/22 (23%)
leucine-rich repeat 262..285 CDD:275380 9/22 (41%)
leucine-rich repeat 286..309 CDD:275380 4/25 (16%)
leucine-rich repeat 310..334 CDD:275380 6/23 (26%)
leucine-rich repeat 335..357 CDD:275380 7/22 (32%)
leucine-rich repeat 358..381 CDD:275380 9/22 (41%)
leucine-rich repeat 382..405 CDD:275380 5/22 (23%)
leucine-rich repeat 406..427 CDD:275380 5/20 (25%)
7tmA_Relaxin_R 467..752 CDD:320265 112/289 (39%)
TM helix 1 468..494 CDD:320265 14/25 (56%)
TM helix 2 502..527 CDD:320265 8/24 (33%)
TM helix 3 547..577 CDD:320265 11/29 (38%)
TM helix 4 588..610 CDD:320265 8/21 (38%)
TM helix 5 638..667 CDD:320265 9/28 (32%)
TM helix 6 681..711 CDD:320265 13/29 (45%)
TM helix 7 720..745 CDD:320265 13/24 (54%)
rxfp2aXP_068079928.2 None

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