DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and rxfp2b

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001315011.1 Gene:rxfp2b / 566888 ZFINID:ZDB-GENE-110408-27 Length:750 Species:Danio rerio


Alignment Length:705 Identity:231/705 - (32%)
Similarity:344/705 - (48%) Gaps:77/705 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 PDADDKCPGGYFHCNTTAQCVPQRANCDGSVDCDDASDEVNC-VNEVDAKYWDHLYRKQPFGRHD 146
            |..|  ||.|:|.|...:.|:||..:|:...||.:.:||.|| .|...|..:|..:::   |...
Zfish    35 PSED--CPLGHFPCGNVSICLPQVLHCNNQKDCPNGADEDNCGDNSGWADLFDRTFKR---GYLQ 94

  Fly   147 NLRIGECLWPNENFSCPCRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHETFFSELPD 211
            .|.. :|........|.|...||.|....|..||:           ::.|               
Zfish    95 ELAT-DCQVEQYPDVCRCINTEIHCVHASLRSIPQ-----------VSAN--------------- 132

  Fly   212 VDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLHHLK 276
            |.||.||...||.:...||.:..  .|:.|::.||.:..:....|....:|..|.|::|.:..|.
Zfish   133 VTSLSLKSNKIRTLPDEAFIKYI--KLQRLFLQDNCINTVSIQAFSGLYKLQKLSLSQNSISLLS 195

  Fly   277 RSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDR----FP-------- 329
            ...|.:|:||:.|.|..|.|....|..||.|.:|..|.:....|:.|...|    .|        
Zfish   196 PGVFRDLRKLKWLILDDNPITTIAANTFAGLSSLFFLSMVNTSLEALPSARLCAHMPFLSWLDFE 260

  Fly   330 ---------RTLL---NLHTLSLAYNQIEDIAANTFPFPRLR-YLFLAGNRLSHIRDETFCNLSN 381
                     .|||   :|..|||..|.|:.:..|||...|:. .|.|:.|.:..:....|.:|.:
Zfish   261 GNSITTLGLSTLLDCEHLTVLSLRANLIKSLPENTFQSLRMMGDLDLSNNSIKELPVGIFKDLRS 325

  Fly   382 LQGLHLNENRIEGFDLEAFACLKNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWFHLCSAAMN 446
            ||.|:|::|.::......|..|..|.||.|.|.....:.:.:.:.:.:|.||||..|..||.|.:
Zfish   326 LQSLNLSQNPLDHIHPGQFNHLIQLQSLGLEGVEIPNIQTSMFRPMDNLSYIYFKKFQYCSYAPH 390

  Fly   447 VRVCDPHGDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLYLRHLAA 511
            ||.|.|:.||:||...||.|.:||.||||||.|...|||.|:..|...::.:|: |:..::.|..
Zfish   391 VRKCKPNSDGLSSFEDLLANVVLRVSVWVMAFITCFGNLFVIGMRTVLRAENNL-HAFCIKVLCC 454

  Fly   512 SDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSV 576
            :|.|||:||..:...|:.|||||.|..:.|..|..|...|||:..|.:.|.:|||.:|.::.:.:
Zfish   455 ADCLMGVYLFFVGIFDVKFRGEYNKNAKVWMESLECRTIGFLAMLSSEVSVMLLTYLTLEKFLVI 519

  Fly   577 TRPLKPRDTEKVRIVLRLLLLWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLH---IHDPYAKG 638
            ..|.......|.:....|:.:|.:...:||.|||....|| ::||.||||..||   :..|.|||
Zfish   520 VFPFSHLRPSKCQTFTVLVSIWLLGISIAAVPLLNEDTFG-NYYGLNGVCFPLHSERLEKPVAKG 583

  Fly   639 WEYSALLFILVNTLSLIFILFSYIRMLQAIRDSGGGMRST------HSGRENVVATRFAIIVTTD 697
              ||..:|:.:|.|:.:.|:.||..|..:|..:  |:|:|      |  |:..:|.||..||.:|
Zfish   584 --YSTGIFLGLNLLAFLIIVVSYSSMFYSIYKT--GIRATELPGRLH--RDVAMAHRFFFIVFSD 642

  Fly   698 CACWLPIIVVKLAALSGCEISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQL 752
            ..||:||.:||:.:|...||...:.:|:.:.:||:||||||:||||||:.|::|:
Zfish   643 ALCWIPIFMVKILSLLEVEIPGTITSWVVIFILPINSALNPILYTLTTSFFREQV 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011 13/36 (36%)
LRR 167..>430 CDD:443914 74/287 (26%)
leucine-rich repeat 188..211 CDD:275380 1/22 (5%)
leucine-rich repeat 212..235 CDD:275380 9/22 (41%)
leucine-rich repeat 238..261 CDD:275380 5/22 (23%)
leucine-rich repeat 262..285 CDD:275380 7/22 (32%)
leucine-rich repeat 286..309 CDD:275380 9/22 (41%)
leucine-rich repeat 310..334 CDD:275380 9/47 (19%)
leucine-rich repeat 335..357 CDD:275380 9/21 (43%)
leucine-rich repeat 358..381 CDD:275380 5/23 (22%)
leucine-rich repeat 382..405 CDD:275380 7/22 (32%)
leucine-rich repeat 406..427 CDD:275380 5/20 (25%)
7tmA_Relaxin_R 467..752 CDD:320265 111/293 (38%)
TM helix 1 468..494 CDD:320265 14/25 (56%)
TM helix 2 502..527 CDD:320265 8/24 (33%)
TM helix 3 547..577 CDD:320265 10/29 (34%)
TM helix 4 588..610 CDD:320265 5/21 (24%)
TM helix 5 638..667 CDD:320265 10/28 (36%)
TM helix 6 681..711 CDD:320265 13/29 (45%)
TM helix 7 720..745 CDD:320265 13/24 (54%)
rxfp2bNP_001315011.1 LDLa 39..74 CDD:238060 13/34 (38%)
leucine-rich repeat 114..132 CDD:275380 6/28 (21%)
LRR 130..>364 CDD:443914 68/250 (27%)
leucine-rich repeat 133..156 CDD:275380 9/24 (38%)
leucine-rich repeat 157..180 CDD:275380 5/22 (23%)
leucine-rich repeat 181..204 CDD:275380 7/22 (32%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..253 CDD:275380 5/23 (22%)
leucine-rich repeat 254..277 CDD:275380 3/22 (14%)
leucine-rich repeat 278..301 CDD:275380 9/22 (41%)
leucine-rich repeat 302..325 CDD:275380 5/22 (23%)
leucine-rich repeat 326..349 CDD:275380 7/22 (32%)
leucine-rich repeat 350..369 CDD:275380 5/18 (28%)
7tm_GPCRs 411..697 CDD:475119 111/293 (38%)
TM helix 1 413..437 CDD:410628 14/23 (61%)
TM helix 2 446..467 CDD:410628 7/20 (35%)
TM helix 3 491..513 CDD:410628 8/21 (38%)
TM helix 4 535..551 CDD:410628 4/15 (27%)
TM helix 5 583..606 CDD:410628 9/24 (38%)
TM helix 6 632..654 CDD:410628 11/21 (52%)
TM helix 7 665..690 CDD:410628 13/24 (54%)

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