DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr4 and Lgr6

DIOPT Version :9

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:XP_573455.1 Gene:Lgr6 / 498233 RGDID:1560339 Length:965 Species:Rattus norvegicus


Alignment Length:862 Identity:210/862 - (24%)
Similarity:302/862 - (35%) Gaps:268/862 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 PQRANC--DG---SVDCDDASDEVNCVNEVDA------KYWD----HLYRKQPFGRHDNLRIGEC 153
            |...:|  ||   |.||.:..     ::||.|      .|.|    :|...|| |...:||..| 
  Rat    36 PAPCHCQEDGIMLSADCSELG-----LSEVPADLDPLTAYLDLSMNNLTELQP-GLFHHLRFLE- 93

  Fly   154 LWPNENFSCPCRGDEILCRFQQLTDIPERL--PQHDLATLDLTGNNFETIHETFFSELPDVDSLV 216
                          |:......|:.||.:.  ..|.|..|.|..|....|......|||.:.||.
  Rat    94 --------------ELRLSGNHLSHIPRQAFSGLHSLKILMLQSNQLRGIPAEALWELPSLQSLR 144

  Fly   217 LKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLHHLKRSDFL 281
            |....|..:...:|:.|:.  ||.|::|||.|..:|.........|..:.||.|.:.|:....|.
  Rat   145 LDANLISLVPERSFEGLSS--LRHLWLDDNALTEIPVRALNNLPALQAMTLALNRIRHIPDYAFQ 207

  Fly   282 NLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRL----------------------- 323
            ||..|..|.|..|||.:.....|..|.|||.|.||.|.|:..                       
  Rat   208 NLTSLVVLHLHNNRIQHVGTHSFEGLHNLETLDLNYNELQEFPVAIRTLGRLQELGFHNNNIKAI 272

  Fly   324 ------------------DPDRFP-----RTLLNLHTLSLAYNQIEDIAANTFP----------- 354
                              :|.:|.     :.|..||||||  |...||  ..||           
  Rat   273 PEKAFMGNPLLQTIHFYDNPIQFVGRSAFQYLSKLHTLSL--NGATDI--QEFPDLKGTTSLEIL 333

  Fly   355 -----------------FPRLRYLFLA----------------------GNRLSHIRDETFCNLS 380
                             .||||.|.|:                      .||:..|..:||..||
  Rat   334 TLTRAGIRLLPAGMCQQLPRLRILELSHNQIEELPSLHRCQKLEEIGLQHNRIWEIGADTFSQLS 398

  Fly   381 NLQGLHLNENRIEGFDLEAFACLKNLSSLLLTGNRFQTL-------------------------D 420
            :||.|.|:.|.|.....|||:.|::|..|.||.|:..||                         |
  Rat   399 SLQALDLSWNAIRAIHPEAFSTLRSLVKLDLTDNQLTTLPLAGLGGLMHLKLKGNLALSQAFSKD 463

  Fly   421 SRVLKNLTSLDYIY---------------FSW----FH-------------------------LC 441
            |.....:..:.|.|               ..|    ||                         |.
  Rat   464 SFPKLRILEVPYAYQCCAYGLCANFFKTSGQWQAEDFHAEEEEAPKRPLGLLAGQAENHYDLDLD 528

  Fly   442 SAAMNVRVCDPHGDGISSKL--------HLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRS 498
            ...|......||.....|.:        ||.::..:|.:||.:..::|:.|.||||..:......
  Rat   529 ELQMETEDSKPHPSVQCSPVPGPFKPCEHLFESWGIRLAVWAIVLLSVLCNGLVLLTVFAGGPSP 593

  Fly   499 NVEHSLYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTL 563
            .....|.:..:|.::.|.||...|:|..|....|::.:|...|.....|...|||:....::|.|
  Rat   594 LSPVKLVVGAIAGANALTGISCGLLASVDALTFGQFAEYGARWETGLGCQATGFLAVLGSEASVL 658

  Fly   564 LLTLVTWDRLMSVT--RPL-KPRDTEKVRI-VLRLLLLWGISFGLAAAPLLPNPYFGSHFYGNNG 624
            ||||......:|||  |.. |......||. .|..|.|    .|||||  ||....|.  ||.:.
  Rat   659 LLTLAAVQCSVSVTCVRAYGKAPSPGSVRAGALGCLAL----AGLAAA--LPLASVGE--YGASP 715

  Fly   625 VCLSLHIHDPYAK--------GWEYSALLFILVNTLSLIFILFSYIRM--------LQAIRDSGG 673
            :||      |||.        |:   |:..:::|:|..:.:..:||::        .:|:.|.  
  Rat   716 LCL------PYAPPEGRPAALGF---AVALVMMNSLCFLVVAGAYIKLYCDLPRGDFEAVWDC-- 769

  Fly   674 GMRSTHSGRENVVATRFAIIVTTDCACWLPIIVVKLAALSGC-EISPDLYAWLAVLVLPVNSALN 737
                       .:....|.::..|...:.|:..:..|::.|. .::|:....:.::|||:.:.||
  Rat   770 -----------AMVRHVAWLIFADGLLYCPVAFLSFASMLGLFPVTPEAVKSVLLVVLPLPACLN 823

  Fly   738 PVLYTLTTAAFKQQLRR 754
            |:||.|....|::.|||
  Rat   824 PLLYLLFNPHFREDLRR 840

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:278486 7/24 (29%)
LRR_RI <184..397 CDD:238064 80/308 (26%)
LRR_8 188..248 CDD:290566 20/59 (34%)
leucine-rich repeat 188..211 CDD:275380 7/22 (32%)
leucine-rich repeat 212..235 CDD:275380 6/22 (27%)
leucine-rich repeat 238..261 CDD:275380 8/22 (36%)
LRR_8 261..320 CDD:290566 23/58 (40%)
leucine-rich repeat 262..285 CDD:275380 8/22 (36%)
LRR_4 284..325 CDD:289563 16/81 (20%)
leucine-rich repeat 286..309 CDD:275380 8/22 (36%)
LRR_4 308..348 CDD:289563 18/85 (21%)
leucine-rich repeat 310..334 CDD:275380 10/69 (14%)
leucine-rich repeat 335..357 CDD:275380 11/49 (22%)
LRR_8 356..416 CDD:290566 28/81 (35%)
leucine-rich repeat 358..381 CDD:275380 10/44 (23%)
LRR_4 381..421 CDD:289563 17/64 (27%)
leucine-rich repeat 382..405 CDD:275380 10/22 (45%)
leucine-rich repeat 406..427 CDD:275380 9/45 (20%)
7tm_1 483..741 CDD:278431 71/278 (26%)
Lgr6XP_573455.1 LRRNT 34..68 CDD:214470 10/36 (28%)
LRR_RI <70..248 CDD:238064 60/195 (31%)
leucine-rich repeat 70..91 CDD:275380 7/21 (33%)
LRR_8 92..150 CDD:290566 17/72 (24%)
leucine-rich repeat 92..115 CDD:275380 5/37 (14%)
leucine-rich repeat 116..139 CDD:275380 7/22 (32%)
LRR_8 138..198 CDD:290566 19/61 (31%)
leucine-rich repeat 140..163 CDD:275380 6/22 (27%)
leucine-rich repeat 164..187 CDD:275380 8/22 (36%)
LRR_8 186..246 CDD:290566 23/59 (39%)
leucine-rich repeat 188..211 CDD:275380 8/22 (36%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 236..258 CDD:275380 7/21 (33%)
LRR_RI 253..>442 CDD:238064 44/192 (23%)
LRR_8 258..314 CDD:290566 9/57 (16%)
leucine-rich repeat 259..282 CDD:275380 0/22 (0%)
leucine-rich repeat 283..304 CDD:275380 2/20 (10%)
LRR_8 305..364 CDD:290566 17/62 (27%)
leucine-rich repeat 330..344 CDD:275378 0/13 (0%)
leucine-rich repeat 354..375 CDD:275380 4/20 (20%)
LRR_8 375..434 CDD:290566 22/58 (38%)
leucine-rich repeat 376..399 CDD:275380 6/22 (27%)
leucine-rich repeat 400..421 CDD:275380 9/20 (45%)
leucine-rich repeat 424..444 CDD:275380 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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