Sequence 1: | NP_001285192.1 | Gene: | Lgr4 / 5740505 | FlyBaseID: | FBgn0085440 | Length: | 809 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_037110.1 | Gene: | Lhcgr / 25477 | RGDID: | 3007 | Length: | 700 | Species: | Rattus norvegicus |
Alignment Length: | 698 | Identity: | 162/698 - (23%) |
---|---|---|---|
Similarity: | 271/698 - (38%) | Gaps: | 150/698 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 162 CPCRGDEIL-CRFQQLTDIPERLPQHDLATLDLT--------GNNFETIHETFFSELPDVDSLVL 217
Fly 218 KFCSIREIASHAFDRLAD-------NPLRTLYMDDNKLPHLPE-----------HFFPEGNQLS- 263
Fly 264 -----ILILARN-HLHHLKRSDF--LNLQKLQELDLRGNRIGNFEAEVF--ARLPNLEV---LYL 315
Fly 316 NENHLKRLDPDRFP---------------------RTLLNLHTLSL----AYNQIEDIAANTFPF 355
Fly 356 PRLRYLFLAGNRLSHIRDETFCNLSNLQGLHLNENRIEGFDLEAFACLKNLSSLLLTGNR---FQ 417
Fly 418 TLDSRVLK--NLTSLDYIYFSWFHLCSAAMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIA 480
Fly 481 VVGNLLVLLGRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSG 545
Fly 546 VCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLL-LWGISFGLAAAPL 609
Fly 610 LPNPYFGSHFYGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLSLIFILFSYIRMLQAIRDSGGG 674
Fly 675 MRSTHSGRENVVATRFAIIVTTDCACWLPI--------IVVKLAALSGCEISPDLYAWLAVLVLP 731
Fly 732 VNSALNPVLYTLTTAAFKQQLRRYCHTLPSCSLVNNETRSQTQTAYES 779 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lgr4 | NP_001285192.1 | Ldl_recept_a | 87..124 | CDD:278486 | |
LRR_RI | <184..397 | CDD:238064 | 55/277 (20%) | ||
LRR_8 | 188..248 | CDD:290566 | 19/74 (26%) | ||
leucine-rich repeat | 188..211 | CDD:275380 | 8/30 (27%) | ||
leucine-rich repeat | 212..235 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 238..261 | CDD:275380 | 5/33 (15%) | ||
LRR_8 | 261..320 | CDD:290566 | 17/72 (24%) | ||
leucine-rich repeat | 262..285 | CDD:275380 | 7/31 (23%) | ||
LRR_4 | 284..325 | CDD:289563 | 11/45 (24%) | ||
leucine-rich repeat | 286..309 | CDD:275380 | 6/24 (25%) | ||
LRR_4 | 308..348 | CDD:289563 | 11/67 (16%) | ||
leucine-rich repeat | 310..334 | CDD:275380 | 8/47 (17%) | ||
leucine-rich repeat | 335..357 | CDD:275380 | 4/25 (16%) | ||
LRR_8 | 356..416 | CDD:290566 | 11/62 (18%) | ||
leucine-rich repeat | 358..381 | CDD:275380 | 3/22 (14%) | ||
LRR_4 | 381..421 | CDD:289563 | 9/42 (21%) | ||
leucine-rich repeat | 382..405 | CDD:275380 | 3/22 (14%) | ||
leucine-rich repeat | 406..427 | CDD:275380 | 5/25 (20%) | ||
7tm_1 | 483..741 | CDD:278431 | 71/266 (27%) | ||
Lhcgr | NP_037110.1 | leucine-rich repeat | 55..78 | CDD:275380 | 6/22 (27%) |
LRR_5 | 66..204 | CDD:404228 | 29/145 (20%) | ||
leucine-rich repeat | 79..103 | CDD:275380 | 9/30 (30%) | ||
leucine-rich repeat | 104..128 | CDD:275380 | 4/23 (17%) | ||
LRR 1 | 126..150 | 3/23 (13%) | |||
leucine-rich repeat | 129..150 | CDD:275380 | 1/20 (5%) | ||
LRR 2 | 152..175 | 5/22 (23%) | |||
leucine-rich repeat | 155..178 | CDD:275380 | 5/22 (23%) | ||
LRR 3 | 176..200 | 6/24 (25%) | |||
leucine-rich repeat | 179..202 | CDD:275380 | 5/23 (22%) | ||
LRR 4 | 202..224 | 6/21 (29%) | |||
leucine-rich repeat | 203..227 | CDD:275380 | 6/23 (26%) | ||
LRR 5 | 225..248 | 1/22 (5%) | |||
leucine-rich repeat | 228..248 | CDD:275380 | 1/19 (5%) | ||
LRR 6 | 250..271 | 5/20 (25%) | |||
7tmA_LHCGR | 365..638 | CDD:320481 | 80/292 (27%) | ||
TM helix 1 | 366..390 | CDD:320481 | 9/23 (39%) | ||
TM helix 2 | 399..420 | CDD:320481 | 9/21 (43%) | ||
TM helix 3 | 444..466 | CDD:320481 | 7/21 (33%) | ||
TM helix 4 | 489..505 | CDD:320481 | 4/15 (27%) | ||
TM helix 5 | 529..552 | CDD:320481 | 4/25 (16%) | ||
TM helix 6 | 572..594 | CDD:320481 | 8/21 (38%) | ||
TM helix 7 | 606..631 | CDD:320481 | 12/31 (39%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2087 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |