Sequence 1: | NP_001285192.1 | Gene: | Lgr4 / 5740505 | FlyBaseID: | FBgn0085440 | Length: | 809 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_954707.1 | Gene: | Fshr / 25449 | RGDID: | 2632 | Length: | 692 | Species: | Rattus norvegicus |
Alignment Length: | 687 | Identity: | 166/687 - (24%) |
---|---|---|---|
Similarity: | 286/687 - (41%) | Gaps: | 123/687 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 162 CPCRGDEILCRFQQLTDIPERLPQH-----------------------DLATLDLTGNN-FETIH 202
Fly 203 ETFFSELPDVDSL-VLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILI 266
Fly 267 LARN-HLHHLKRSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDRFPR 330
Fly 331 TLLNLHTLSLAYNQIEDIAANTF---------PFPRLRYLFLAGN---RLSHIRDETFCNLSNLQ 383
Fly 384 GLHLNENRIEGFDLE------AFACLK-NLSSLLLTGNRF---QTLD--SRVLKNLTSL------ 430
Fly 431 -----DYIYFSW-FHLCSAAMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLL 489
Fly 490 GRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLS 554
Fly 555 TFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLLLWGISFGLAAAPLLPNPYFGSHF 619
Fly 620 YGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLSLIFILFSYIRMLQAIRDSGGGMRSTHSGREN 684
Fly 685 VVATRFAIIVTTDCACWLPI--------IVVKLAALSGCEISPDLYAWLAVLVLPVNSALNPVLY 741
Fly 742 TLTTAAFKQQ----LRRY-CHTLPSCSLVNNETRSQT 773 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lgr4 | NP_001285192.1 | Ldl_recept_a | 87..124 | CDD:278486 | |
LRR_RI | <184..397 | CDD:238064 | 49/250 (20%) | ||
LRR_8 | 188..248 | CDD:290566 | 16/61 (26%) | ||
leucine-rich repeat | 188..211 | CDD:275380 | 7/23 (30%) | ||
leucine-rich repeat | 212..235 | CDD:275380 | 5/23 (22%) | ||
leucine-rich repeat | 238..261 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 261..320 | CDD:290566 | 12/59 (20%) | ||
leucine-rich repeat | 262..285 | CDD:275380 | 6/23 (26%) | ||
LRR_4 | 284..325 | CDD:289563 | 5/40 (13%) | ||
leucine-rich repeat | 286..309 | CDD:275380 | 2/22 (9%) | ||
LRR_4 | 308..348 | CDD:289563 | 10/39 (26%) | ||
leucine-rich repeat | 310..334 | CDD:275380 | 5/23 (22%) | ||
leucine-rich repeat | 335..357 | CDD:275380 | 5/30 (17%) | ||
LRR_8 | 356..416 | CDD:290566 | 17/69 (25%) | ||
leucine-rich repeat | 358..381 | CDD:275380 | 4/25 (16%) | ||
LRR_4 | 381..421 | CDD:289563 | 14/51 (27%) | ||
leucine-rich repeat | 382..405 | CDD:275380 | 9/29 (31%) | ||
leucine-rich repeat | 406..427 | CDD:275380 | 5/25 (20%) | ||
7tm_1 | 483..741 | CDD:278431 | 73/265 (28%) | ||
Fshr | NP_954707.1 | LRRNT | 23..50 | CDD:214470 | 9/26 (35%) |
LRR 1 | 49..72 | 0/22 (0%) | |||
LRR_8 | 72..132 | CDD:290566 | 16/61 (26%) | ||
leucine-rich repeat | 72..96 | CDD:275380 | 7/23 (30%) | ||
LRR 2 | 73..97 | 7/23 (30%) | |||
leucine-rich repeat | 97..121 | CDD:275380 | 5/23 (22%) | ||
LRR 3 | 98..118 | 4/19 (21%) | |||
LRR 4 | 119..143 | 7/25 (28%) | |||
leucine-rich repeat | 122..143 | CDD:275380 | 6/20 (30%) | ||
leucine-rich repeat | 144..171 | CDD:275380 | 7/40 (18%) | ||
LRR 5 | 144..169 | 7/38 (18%) | |||
LRR 6 | 170..192 | 6/30 (20%) | |||
leucine-rich repeat | 172..194 | CDD:275380 | 4/30 (13%) | ||
LRR_8 | 193..245 | CDD:290566 | 10/52 (19%) | ||
LRR 7 | 193..216 | 7/23 (30%) | |||
leucine-rich repeat | 195..219 | CDD:275380 | 6/24 (25%) | ||
LRR 8 | 217..240 | 2/22 (9%) | |||
leucine-rich repeat | 220..243 | CDD:275380 | 3/22 (14%) | ||
LRR 9 | 241..259 | 4/17 (24%) | |||
GnHR_trans | 282..348 | CDD:289164 | 14/66 (21%) | ||
7tm_1 | 378..625 | CDD:278431 | 73/265 (28%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2087 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |