DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and fshr-1

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001263853.1 Gene:fshr-1 / 179381 WormBaseID:WBGene00008239 Length:932 Species:Caenorhabditis elegans


Alignment Length:728 Identity:165/728 - (22%)
Similarity:286/728 - (39%) Gaps:192/728 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 SELP-----DVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILI 266
            |:||     ||..|.|...||..|..:.||:...  :|.|.:|::  .|| ||.  :|:.||:|.
 Worm    75 SQLPTNLTADVGYLYLHNTSISVITPNFFDKFPS--IRELEIDNS--AHL-EHI--DGSSLSVLS 132

  Fly   267 LARN-------HLHHLKRSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRLD 324
            ..|.       :|..:.....:|..::|.:.|:.|.:        |.:|:|.:...:...|.|:|
 Worm   133 KLRKLSVVKCPNLREISGKLLVNNTRIQNVILKNNGL--------ATMPSLRMTDAHHVLLDRID 189

  Fly   325 ---------PDRFPRTLLNLHTLSLAYNQIEDIAANTFPFPRLRYLFLAGNRLSHIRD---ETFC 377
                     .|...|. :...|:.|:.|::.:|:.  :.|...::|.|..|....:|.   :.|.
 Worm   190 LSGNKIKFISDSKVRN-VKARTVVLSENKLIEISG--YAFTESQFLKLKLNNNPDLRSLSVDAFK 251

  Fly   378 NLSNLQGLHLNENRIEGFDLEAFACLKNLSSLLLTGNRFQTLDS--RVLKNLTSLDYIYFSWFHL 440
            |::.||.|.|:...|:...:..   ||.|.:|:|  |...||.|  .|| :.|.|:..:|::.|.
 Worm   252 NMAGLQTLDLSHTSIDTLPING---LKKLKTLIL--NDVPTLKSLPSVL-SFTDLETAHFTYPHH 310

  Fly   441 C-------SAAMN-------------VRVCD---------------------------------- 451
            |       ...||             .|:||                                  
 Worm   311 CCLFKYVDDVTMNDNGKYQRNAKEIHKRICDKREQQKVARRRKRETSGIDFLDMLLKEWTDNSTY 375

  Fly   452 ---------------------------------------PHGDGISSKLHLLDNQILRGSVWVMA 477
                                                   |..|.::...:::....||.:|||:.
 Worm   376 TGPDDADDDELPPFVEIGAEPCQSIGEEVQKYYSNITCYPQPDALNPCENIVGYPFLRIAVWVVC 440

  Fly   478 SIAVVGNLLV--LLGRYFYKSRSNVEHSLYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEET 540
            ..|:|||::|  ||| ..|:.|..: |.||:.:::.:|.:.||||.::|.||.....||.::...
 Worm   441 LAAIVGNIIVWALLG-IVYEKRMRM-HYLYMINMSVADMVTGIYLAVLAIADAKMSDEYYRHAVW 503

  Fly   541 WRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLKPRD-TEKVRIVLRLLLLWGISFGL 604
            |:....|..||||:.|:.:...:.:.|:.::...:..:..:.|. :.||.:   ||::.|..|.:
 Worm   504 WQTGWGCRAAGFLAVFASELGIISMFLIAFEMSYNTRQSFRGRRLSPKVGV---LLMIGGWLFAI 565

  Fly   605 AAAPLLPNPYFGSHFYGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLSLIFILFSY---IRMLQ 666
            ..|.|   |:|....|..:.|||.|.....:.|.:....|.|   |.|:...:..||   ::||:
 Worm   566 IMAIL---PWFDVSSYSESSVCLPLRAATIFDKSYLIFGLSF---NFLAFAAMALSYGFIVKMLK 624

  Fly   667 AIRDSGGGMRSTHSGRENVVATRFAIIVTTDCACWLPIIVVKLAALSGCE-ISPDLYAWLAVLVL 730
                     .:.....:..:.|:..::|.||..||.|.:.....|..|.. :|.....::.|...
 Worm   625 ---------ENETREEDRALITKMTVLVVTDLICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFF 680

  Fly   731 PVNSALNPVLYTLTTAAFKQQLRRYCHTLP-----------SCSLVNN---------ETRSQTQT 775
            |:|:..||.||...|...:.::|  ..|||           :.|.::|         ..||:.:.
 Worm   681 PINAFANPFLYVFFTEVIQHRVR--SKTLPVIRRITTGPLNAASSLSNFYHSQPPGAHRRSRDEP 743

  Fly   776 AYESGLSVSLAHL 788
            ...||:.:::..:
 Worm   744 TSPSGMHLAVTQV 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011
LRR 167..>430 CDD:443914 65/248 (26%)
leucine-rich repeat 188..211 CDD:275380 3/8 (38%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 238..261 CDD:275380 8/22 (36%)
leucine-rich repeat 262..285 CDD:275380 6/29 (21%)
leucine-rich repeat 286..309 CDD:275380 4/22 (18%)
leucine-rich repeat 310..334 CDD:275380 6/32 (19%)
leucine-rich repeat 335..357 CDD:275380 5/21 (24%)
leucine-rich repeat 358..381 CDD:275380 6/25 (24%)
leucine-rich repeat 382..405 CDD:275380 6/22 (27%)
leucine-rich repeat 406..427 CDD:275380 9/22 (41%)
7tmA_Relaxin_R 467..752 CDD:320265 79/291 (27%)
TM helix 1 468..494 CDD:320265 13/27 (48%)
TM helix 2 502..527 CDD:320265 9/24 (38%)
TM helix 3 547..577 CDD:320265 7/29 (24%)
TM helix 4 588..610 CDD:320265 6/21 (29%)
TM helix 5 638..667 CDD:320265 8/31 (26%)
TM helix 6 681..711 CDD:320265 7/29 (24%)
TM helix 7 720..745 CDD:320265 7/24 (29%)
fshr-1NP_001263853.1 LRR 72..>302 CDD:443914 66/250 (26%)
leucine-rich repeat 87..108 CDD:275380 7/20 (35%)
leucine-rich repeat 109..133 CDD:275380 11/28 (39%)
leucine-rich repeat 134..158 CDD:275380 3/23 (13%)
leucine-rich repeat 159..174 CDD:275380 4/22 (18%)
leucine-rich repeat 185..208 CDD:275380 5/23 (22%)
leucine-rich repeat 209..231 CDD:275380 5/23 (22%)
leucine-rich repeat 232..255 CDD:275380 6/22 (27%)
leucine-rich repeat 256..276 CDD:275380 6/22 (27%)
7tmA_Glyco_hormone_R 430..702 CDD:320264 79/291 (27%)
TM helix 1 431..457 CDD:320264 13/26 (50%)
TM helix 2 465..490 CDD:320264 9/24 (38%)
TM helix 3 510..540 CDD:320264 7/29 (24%)
TM helix 4 551..573 CDD:320264 9/27 (33%)
TM helix 5 593..622 CDD:320264 7/31 (23%)
TM helix 6 630..660 CDD:320264 7/29 (24%)
TM helix 7 670..695 CDD:320264 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.

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