DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and rxfp1

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:XP_031751332.1 Gene:rxfp1 / 100494807 XenbaseID:XB-GENE-985695 Length:760 Species:Xenopus tropicalis


Alignment Length:704 Identity:220/704 - (31%)
Similarity:340/704 - (48%) Gaps:70/704 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 DDKCPGGYFHCNTTAQCVPQRANCDGSVDCDDASDEVNC------VNEVDAKYWDHLYRKQPFGR 144
            |..||.|||.|....:|:||..:|:|..:|.:.:||.||      ..::|..:..| |.|.....
 Frog    26 DISCPLGYFPCGNITKCLPQFMHCNGVDECGNQADEDNCGDNNGWSQQLDKLFEKH-YEKIGLNV 89

  Fly   145 HD-NLRIGECLWPNENFSCPCRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHETFFSE 208
            .| .::..||........|.|||.|:.|...:|..:|...|  ::..:.|..|....:....|..
 Frog    90 FDLEMKPSECTLGPVPTQCLCRGLELDCDGAKLRTVPSVSP--NVTIMSLQNNMLRKLGPDEFRI 152

  Fly   209 LPDVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPEHFFPEGNQLSILILARNHLH 273
            .||:..|.|:..:||.::.|||        :.||                  .|:.|.|:.|.:.
 Frog   153 FPDLRKLYLQHNNIRTVSVHAF--------KGLY------------------NLTKLYLSHNEIT 191

  Fly   274 HLKRSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLNENHLKRLDPDRFPRTLLNLHTL 338
            .||...|.:|.:|:.|.:..|:|.....:.|..|.:|.:|.:..|.|:||......:.:..|:.|
 Frog   192 TLKPGVFEDLHRLEWLIIENNKITRIYPQTFQGLNSLILLVMMNNFLERLPDKSLCQHMPKLNWL 256

  Fly   339 SLAYNQIEDIAANTF-PFPRLRYLFLAGNRLSHIRDETFCNLSNLQGLHLNENRIEGFDLEAFAC 402
            ....|.::.:...|| ....|..|.:..||:|.|.:.||.:|..|..|.|..||||.|.......
 Frog   257 DFEGNNVQSLTNTTFISCATLTVLVMRRNRISTISENTFSSLYRLDELDLANNRIEAFSPSLMKG 321

  Fly   403 LKNLSSLLLTGNRFQTLDS------------------------RVLKNLTSLDYIYFSWFHLCSA 443
            :|.||.|.::.|..|.:.:                        |:...|.:|.:|||..|..|..
 Frog   322 VKELSQLNISHNPIQKIQADQFDYVIKLKSLSLEGIEIPNIQRRMFMPLKNLTHIYFKKFQYCGF 386

  Fly   444 AMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLYLRH 508
            |.:||.|.|:.|||||..:||.:.:.|..|||::.|...||:.|:..|.:.:|.:.: |::.:..
 Frog   387 APHVRNCKPNTDGISSLENLLASIVQRVFVWVVSVITCFGNIFVICTRPYIRSENKL-HAMSIMS 450

  Fly   509 LAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTWDRL 573
            |..:|.|||:||.:|...|:.:||||.:..:.|..|..|...|.|:..|.:.|.||||.:|.::.
 Frog   451 LCCADCLMGVYLFVIGYFDLKYRGEYNENAQAWMDSTQCRLVGSLAILSTEVSVLLLTYLTLEKY 515

  Fly   574 MSVTRPLKPRDTEKVRIVLRLLLLWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLHIHDPYAKG 638
            :.:..|.:.....|.|.:..|:|:|.|.|.:|..| |.|..|..::||.||||..||...|.:..
 Frog   516 ICIVYPFRCLKPGKCRTITTLILIWIIGFVIAFIP-LSNQTFFHNYYGTNGVCFPLHSEQPESTA 579

  Fly   639 WE-YSALLFILVNTLSLIFILFSYIRMLQAIRDSGGGMRST----HSGRENVVATRFAIIVTTDC 698
            .: ||.::|:.||..:.|.|:|||..|..:|..:  .:.:|    |..:|..:|.||..||.||.
 Frog   580 AQIYSVIIFLGVNLAAFIIIVFSYSSMFYSIHRT--AIMATEIHNHIKKEMTLAKRFFFIVFTDA 642

  Fly   699 ACWLPIIVVKLAALSGCEISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQL 752
            .||:||.::||.:|...||...:.:|:.:.:||:||||||:|||:||..||:.:
 Frog   643 LCWIPIFILKLLSLLQVEIPGSISSWVVIFILPINSALNPILYTITTRPFKEMI 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011 14/36 (39%)
LRR 167..>430 CDD:443914 69/287 (24%)
leucine-rich repeat 188..211 CDD:275380 3/22 (14%)
leucine-rich repeat 212..235 CDD:275380 7/22 (32%)
leucine-rich repeat 238..261 CDD:275380 2/22 (9%)
leucine-rich repeat 262..285 CDD:275380 8/22 (36%)
leucine-rich repeat 286..309 CDD:275380 6/22 (27%)
leucine-rich repeat 310..334 CDD:275380 6/23 (26%)
leucine-rich repeat 335..357 CDD:275380 5/22 (23%)
leucine-rich repeat 358..381 CDD:275380 9/22 (41%)
leucine-rich repeat 382..405 CDD:275380 8/22 (36%)
leucine-rich repeat 406..427 CDD:275380 6/44 (14%)
7tmA_Relaxin_R 467..752 CDD:320265 105/289 (36%)
TM helix 1 468..494 CDD:320265 9/25 (36%)
TM helix 2 502..527 CDD:320265 9/24 (38%)
TM helix 3 547..577 CDD:320265 10/29 (34%)
TM helix 4 588..610 CDD:320265 8/21 (38%)
TM helix 5 638..667 CDD:320265 11/29 (38%)
TM helix 6 681..711 CDD:320265 14/29 (48%)
TM helix 7 720..745 CDD:320265 12/24 (50%)
rxfp1XP_031751332.1 LDLa 29..64 CDD:238060 14/34 (41%)
LRRNT 105..134 CDD:214470 9/30 (30%)
LRR 131..>363 CDD:443914 62/257 (24%)
leucine-rich repeat 132..155 CDD:275380 3/22 (14%)
leucine-rich repeat 156..179 CDD:275380 9/48 (19%)
leucine-rich repeat 180..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..227 CDD:275380 6/22 (27%)
leucine-rich repeat 228..252 CDD:275380 6/23 (26%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 9/22 (41%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..348 CDD:275380 5/22 (23%)
leucine-rich repeat 349..370 CDD:275380 1/20 (5%)
7tmA_RXFP1_LGR7 410..696 CDD:320631 105/289 (36%)
TM helix 1 411..437 CDD:320631 9/25 (36%)
TM helix 2 444..469 CDD:320631 9/24 (38%)
TM helix 3 489..519 CDD:320631 10/29 (34%)
TM helix 4 530..552 CDD:320631 8/22 (36%)
TM helix 5 580..609 CDD:320631 11/28 (39%)
TM helix 6 625..655 CDD:320631 14/29 (48%)
TM helix 7 664..689 CDD:320631 12/24 (50%)

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