DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr4 and tmtopn2

DIOPT Version :10

Sequence 1:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster
Sequence 2:XP_017946618.1 Gene:tmtopn2 / 100490436 XenbaseID:XB-GENE-990436 Length:390 Species:Xenopus tropicalis


Alignment Length:313 Identity:77/313 - (24%)
Similarity:133/313 - (42%) Gaps:48/313 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   482 VGNLLVLLGRYFYKSRS-NVEHSLYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSG 545
            :.|.:||:  .|.|.:: ....::.|.:::|||.|:.:..|.::... |.:|::|..|..     
 Frog    54 LNNFVVLI--LFCKFKTLRTPVNMMLLNISASDMLVCVSGTTLSFTS-SIKGKWIGGEYG----- 110

  Fly   546 VCAFAGFLSTFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLLLWGISFGLAAAPLL 610
             |.:.||:::.....|.:.|.:::::|..::|...|.....| :.:|.:...|..|......|||
 Frog   111 -CQWYGFVNSCFGIVSLISLAILSYERYSTLTLYNKGGPNFK-KALLAVASSWLYSLVWTVPPLL 173

  Fly   611 PNPYFGSHFYGNNGVCLSLHIHDPYAKGW--------EYSALLFILVNTLSLIFILFSYIRMLQA 667
                 |...||..|...|..:.      |        .|...|||....|.:..:|:.|.|:|.|
 Frog   174 -----GWSSYGREGAGTSCSVR------WTSESVESVSYIICLFIFCLALPVFVMLYCYGRLLYA 227

  Fly   668 IRDSGGGMRSTHSGRENVVATRFAIIVTTDC--ACWLPIIVVKLAALSGCEISPDLYAWLAVLVL 730
            ::..|...:.....||..|.  |.:|.|..|  .||||..||.|.|..|   .|.:.:.:|.:|.
 Frog   228 VKQVGKIRKIAARKREYHVL--FMVITTVICYLLCWLPYGVVALLATFG---RPGVISPVASVVP 287

  Fly   731 PV----NSALNPVLYTLTTAAFKQ--QLRRYCHTLPSCSLVNNETRSQTQTAY 777
            .:    ::..||::|.|....|.:  .:..:||...|.     :.:|..|:.|
 Frog   288 SILAKSSTVFNPIIYILMNKQFYKCFLILFHCHPTSSA-----DGKSICQSNY 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011
LRR 167..>430 CDD:443914
leucine-rich repeat 188..211 CDD:275380
leucine-rich repeat 212..235 CDD:275380
leucine-rich repeat 238..261 CDD:275380
leucine-rich repeat 262..285 CDD:275380
leucine-rich repeat 286..309 CDD:275380
leucine-rich repeat 310..334 CDD:275380
leucine-rich repeat 335..357 CDD:275380
leucine-rich repeat 358..381 CDD:275380
leucine-rich repeat 382..405 CDD:275380
leucine-rich repeat 406..427 CDD:275380
7tmA_Relaxin_R 467..752 CDD:320265 71/286 (25%)
TM helix 1 468..494 CDD:320265 3/11 (27%)
TM helix 2 502..527 CDD:320265 6/24 (25%)
TM helix 3 547..577 CDD:320265 6/29 (21%)
TM helix 4 588..610 CDD:320265 4/21 (19%)
TM helix 5 638..667 CDD:320265 10/36 (28%)
TM helix 6 681..711 CDD:320265 14/31 (45%)
TM helix 7 720..745 CDD:320265 6/28 (21%)
tmtopn2XP_017946618.1 7tmA_tmt_opsin 39..313 CDD:320214 71/284 (25%)
TM helix 1 40..66 CDD:320214 4/13 (31%)
TM helix 2 73..99 CDD:320214 6/26 (23%)
TM helix 3 111..141 CDD:320214 6/29 (21%)
TM helix 4 151..173 CDD:320214 5/22 (23%)
TM helix 5 198..228 CDD:320214 9/29 (31%)
TM helix 6 241..271 CDD:320214 14/31 (45%)
TM helix 7 281..306 CDD:320214 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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