DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34430 and tmbim4

DIOPT Version :10

Sequence 1:NP_001097222.1 Gene:CG34430 / 5740489 FlyBaseID:FBgn0085459 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001004879.1 Gene:tmbim4 / 448209 XenbaseID:XB-GENE-947555 Length:235 Species:Xenopus tropicalis


Alignment Length:229 Identity:53/229 - (23%)
Similarity:101/229 - (44%) Gaps:44/229 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 ADVGIRRRLVRRFYGILILQMACTLPCIELFLKYPLPYNFV------MPLSMV---FTVFLYTCF 92
            |.:.||...:::.|.||..|:..|.....|||.......||      :.:|::   .||...|.:
 Frog    23 ASIQIRMDFLKKVYSILTTQILLTTLTAALFLYSKSIQTFVHESPALLLISVIGSLGTVIALTIY 87

  Fly    93 YVWRDWRRHGPFNYFVLL---------LSTLIGSFNRSVYLLNLVETHWVYIYPVILIIEILGLM 148
                  |:..|.|.::||         ::|.:..::.:|.|...:.|..|:          |||.
 Frog    88 ------RQQHPVNLYLLLAFTAFEAVTVATAVTFYDVAVVLQAFILTTAVF----------LGLT 136

  Fly   149 LYSSQKRFRFTQIRGISIIS----LIFGLFLLLAYRLNRMMEVFSAMACTVEAWYIIYDTHYMLC 209
            .::.|.:..|::. |..:.:    |||..||.|.:....:..:.:|....:...:||:|||.:: 
 Frog   137 AFTFQSKRDFSKF-GAGLFTGLWILIFASFLRLFFYSETVELLIAAAGALLFCGFIIFDTHLLM- 199

  Fly   210 GRHGYNIGPEEFVYAACNIHCDLPKGMWRLMKML 243
                :.:.|||::.|:.|::.|:......|:::|
 Frog   200 ----HKLSPEEYILASVNLYLDIINLFLHLLRIL 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34430NP_001097222.1 BI-1-like 41..231 CDD:469783 49/211 (23%)
tmbim4NP_001004879.1 GAAP_like 2..233 CDD:198411 53/229 (23%)

Return to query results.
Submit another query.