DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fili and Lrrtm1

DIOPT Version :9

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_001349038.1 Gene:Lrrtm1 / 74342 MGIID:2389173 Length:522 Species:Mus musculus


Alignment Length:613 Identity:138/613 - (22%)
Similarity:233/613 - (38%) Gaps:149/613 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRT 87
            |:|.||.....:.|...:.||.:|:|.|......||.:..|..::...|....:|.:|  :.:|.
Mouse    20 VVLCLLGACFQMLPAAPSGCPGQCRCEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSL--SELRA 82

  Fly    88 LEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLS 152
            .:|:  ..|:|..|.|..|.|.::....|:....::.|.||.|.::.|....|:.:.||..:|||
Mouse    83 GQFT--GLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITELANTTFRPMPNLRSVDLS 145

  Fly   153 FNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLHA 217
            :|:::.:.|            ||            |.|:..|..|..|.|.:..||........:
Mouse   146 YNKLQALAP------------DL------------FHGLRKLTTLHMRANAIQFVPVRIFQDCRS 186

  Fly   218 LKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNLTMVPTQ 282
            ||.||:..|.::.:..:||.||.:|..|.::.|.:.:::.:.|..||||..|.|..|.:.:| ..
Mouse   187 LKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLIKVNFAHFPRLISLHSLCLRRNKVAIV-VS 250

  Fly   283 QLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNNN 347
            .|..:.||..::|.||.                         ::.::...|....:||||.|::|
Mouse   251 SLDWVWNLEKMDLSGNE-------------------------IEYMEPHVFETVPYLQTLQLDSN 290

  Fly   348 PQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCN---CSLL-WLWR 408
                    ||....|.||      ||.::|.|          :.|..|...|.   |:|. ||  
Mouse   291 --------RLTYIEPRIL------NSWKSLTS----------ITLAGNLWDCGRNVCALASWL-- 329

  Fly   409 LVTGNFEG-VDPGMEHAAGGAVAALAKEADDEELADEATAVASTDDGVAALAAYIAEQHIVNALH 472
               .||:| .|..::       .|..:.|..|::.|...|....:||....:.::....:.|...
Mouse   330 ---SNFQGRYDANLQ-------CASPEYAQGEDVLDAVYAFHLCEDGAEPTSGHLLSVAVTNRSD 384

  Fly   473 TTEP--SAYELATSSSNRNSGILRMDRQQIGCDIWRDKVRTRRKLLTMSEGEITCPAHIVTVVCA 535
            .|.|  ||..|.......:.....:.....|.:...:.|:..:               :||...|
Mouse   385 LTPPESSATTLVDGGEGHDGTFEPITVALPGGEHAENAVQIHK---------------VVTGTMA 434

  Fly   536 VITCLLVAMIGISV--------LYYLR--FVKRRRK-----LLHERGPMRTSKSIINVHDRILQG 585
            :|...|:.::.:.|        |..||  ||.:|||     .:|:...|...:..::        
Mouse   435 LIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYVD-------- 491

  Fly   586 HNPGGLGLGMSMTLGGGNHVNGLGMTLN 613
            :.|              ||:.|..:.:|
Mouse   492 YKP--------------NHIEGALVIIN 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 4/21 (19%)
leucine-rich repeat 98..121 CDD:275380 6/22 (27%)
LRR_8 120..180 CDD:404697 15/59 (25%)
leucine-rich repeat 122..145 CDD:275380 6/22 (27%)
leucine-rich repeat 146..169 CDD:275380 6/22 (27%)
LRR <161..>354 CDD:227223 45/192 (23%)
leucine-rich repeat 170..193 CDD:275380 4/22 (18%)
leucine-rich repeat 194..217 CDD:275380 6/22 (27%)
leucine-rich repeat 218..265 CDD:275380 14/46 (30%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
leucine-rich repeat 314..338 CDD:275380 1/23 (4%)
LRR_8 337..397 CDD:404697 17/59 (29%)
leucine-rich repeat 339..360 CDD:275380 8/20 (40%)
Lrrtm1NP_001349038.1 LRR 1 64..87 5/26 (19%)
LRR <75..>315 CDD:227223 77/317 (24%)
LRR 2 89..111 7/21 (33%)
leucine-rich repeat 91..114 CDD:275380 6/22 (27%)
LRR 3 112..135 6/22 (27%)
leucine-rich repeat 115..138 CDD:275380 6/22 (27%)
LRR 4 136..159 10/46 (22%)
leucine-rich repeat 139..162 CDD:275380 10/46 (22%)
LRR 5 161..183 6/21 (29%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
LRR 6 184..207 7/22 (32%)
leucine-rich repeat 187..210 CDD:275380 9/22 (41%)
LRR 7 209..231 4/21 (19%)
leucine-rich repeat 211..234 CDD:275380 5/22 (23%)
LRR 8 233..255 8/22 (36%)
leucine-rich repeat 235..257 CDD:275380 6/22 (27%)
LRR 9 256..278 6/46 (13%)
leucine-rich repeat 258..281 CDD:275380 5/47 (11%)
LRR 10 280..302 11/35 (31%)
leucine-rich repeat 282..300 CDD:275380 9/25 (36%)
leucine-rich repeat 306..318 CDD:275378 4/21 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24373
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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