DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fili and Lingo4

DIOPT Version :9

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_001102659.1 Gene:Lingo4 / 499668 RGDID:1562025 Length:618 Species:Rattus norvegicus


Alignment Length:561 Identity:161/561 - (28%)
Similarity:238/561 - (42%) Gaps:88/561 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ATTRSRPWLCGAIPVLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRA-LCVDAALEDVPIQLN 72
            ||...:.||..: |:|.|||     ||..:.:.||:.|.|   .:.:|| ||....|:.||..|.
  Rat    29 ATAPKQAWLLWS-PLLFLLL-----LPGGSISSCPTLCDC---TSQTRAVLCAHRRLDTVPGGLP 84

  Fly    73 PETKYINLTVNRIRTLEFSLPFYM-KLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLH 136
            .:|:.::|:.||:..|:..:...: :|:.||||.|.:.||....|.....|.||.|..|.:..:.
  Rat    85 LDTEVLDLSGNRLWGLQRGMLSRLGQLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVG 149

  Fly   137 KHAFKGLTNLLLLDLSFNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRN 201
            ...|.||:.|.||||..|:|......|..:|.||.:|::.:|::|.:....|.|:..|..:....
  Rat   150 PGIFSGLSALTLLDLRLNQIVLFLDGAFGELGSLQQLEVGDNHLVFVAPGAFSGLAKLSTITLER 214

  Fly   202 NRLLDVPASNLWHLHALKSLDMSLNLVEFVRNDSFEGLKELLALSV-QGNVMSELDLSAFEGLIS 265
            ..|..||...|..|.||.:|.:....:|.:.:.:..||.:|..|.: ....:..||..:..|| :
  Rat   215 CNLSTVPGLALAQLPALVALRLRELDIERLPSGALRGLGQLKELEIHHWPSLEALDPGSLVGL-N 278

  Fly   266 LKHLDLSDNNLTMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDS 330
            |..|.::..||:.||.|.|..||.|..|:|..|..|.:||.....|..|:||.||.. .|..|.:
  Rat   279 LSSLAITHCNLSSVPFQALHHLSFLQVLDLSQNPISAIPARRLSPLVRLQELRLSGA-CLTSIAA 342

  Fly   331 RAFVDNTH-LQTLHLNNNPQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFP-VDQLQKLYLG 393
            .||    | |...||                    |:|  ..|:||||....|| .|:|..|.|.
  Rat   343 HAF----HGLTAFHL--------------------LDV--ADNALQTLEETAFPSPDKLVTLRLS 381

  Fly   394 DNPLQCNCSLLWLWRLVTGNFEGVDP----GMEHAAGGAV----------------AALAKEADD 438
            .|||.|:|.||||.||......|..|    |.:|..|..:                |.:.|....
  Rat   382 GNPLTCDCRLLWLLRLRRRLDFGTSPPACAGPQHVQGKNLREFSDILPPGHFTCKPALIRKSGPR 446

  Fly   439 EELADE---ATAVASTDDGVAALAAYIAEQHI----VNALHTTEPSAYELATSSSNRNSGILRMD 496
            ..:|:|   |....|.|...|...:::..|..    |..:...|....|:.:        :...|
  Rat   447 WVIAEEGGHAVFSCSGDGDPAPTVSWMRPQGSWLGRVGRVRVLEDGTLEIRS--------VQLRD 503

  Fly   497 RQQIGCDI----WRDKVRTRRKLL-------TMSEGEITCP 526
            |....|.:    ..|.:||..:::       |:|:..:|.|
  Rat   504 RGAYVCVVSNVAGNDSLRTWLEVIQVEPPNGTLSDPNVTMP 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 5/22 (23%)
leucine-rich repeat 98..121 CDD:275380 9/22 (41%)
LRR_8 120..180 CDD:404697 21/59 (36%)
leucine-rich repeat 122..145 CDD:275380 8/22 (36%)
leucine-rich repeat 146..169 CDD:275380 9/22 (41%)
LRR <161..>354 CDD:227223 58/194 (30%)
leucine-rich repeat 170..193 CDD:275380 6/22 (27%)
leucine-rich repeat 194..217 CDD:275380 6/22 (27%)
leucine-rich repeat 218..265 CDD:275380 11/47 (23%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 8/22 (36%)
leucine-rich repeat 314..338 CDD:275380 9/23 (39%)
LRR_8 337..397 CDD:404697 18/61 (30%)
leucine-rich repeat 339..360 CDD:275380 3/20 (15%)
Lingo4NP_001102659.1 leucine-rich repeat 87..110 CDD:275380 5/22 (23%)
LRR_8 88..145 CDD:290566 18/56 (32%)
LRR_4 88..126 CDD:289563 12/37 (32%)
LRR_RI 110..345 CDD:238064 76/236 (32%)
leucine-rich repeat 111..134 CDD:275380 9/22 (41%)
LRR_8 134..193 CDD:290566 21/58 (36%)
leucine-rich repeat 135..158 CDD:275380 8/22 (36%)
leucine-rich repeat 159..182 CDD:275380 9/22 (41%)
LRR_8 182..237 CDD:290566 16/54 (30%)
leucine-rich repeat 183..206 CDD:275380 6/22 (27%)
leucine-rich repeat 207..230 CDD:275380 6/22 (27%)
leucine-rich repeat 231..254 CDD:275380 5/22 (23%)
leucine-rich repeat 255..302 CDD:275380 15/47 (32%)
LRR_8 278..334 CDD:290566 22/55 (40%)
leucine-rich repeat 303..326 CDD:275380 8/22 (36%)
LRR_8 326..385 CDD:290566 27/85 (32%)
leucine-rich repeat 327..348 CDD:275380 10/25 (40%)
leucine-rich repeat 351..374 CDD:275380 11/44 (25%)
IG_like 445..526 CDD:214653 16/88 (18%)
Ig 456..526 CDD:299845 14/77 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1280
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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