DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fili and tril

DIOPT Version :9

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:XP_002933436.2 Gene:tril / 100498304 XenbaseID:XB-GENE-6050227 Length:872 Species:Xenopus tropicalis


Alignment Length:793 Identity:177/793 - (22%)
Similarity:310/793 - (39%) Gaps:184/793 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IPVLLLLLLTLV-ILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVP----IQLNPETKYINL 80
            :.||:||..||. .:.|:    |...|.|   :.....||.:..|..||    :..:..||..:|
 Frog     7 VEVLVLLTCTLARSVEPK----CLEPCDC---QHQQHVLCSNRGLLSVPKSSHMLSSSATKTFSL 64

  Fly    81 TVNRIRTLEFSLPF--YMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGL 143
            ..|.|..:. :|.|  :.:|:.|||..|.|.::..|.||..:||..|.|..||:::|...|...|
 Frog    65 GGNFIANIS-ALDFVQFPQLQRLDLQYNRIGSIHPKAFEKLTELEELYLGNNLLATLAPGALAPL 128

  Fly   144 TNLLLLDLSFNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVP 208
            ..|.:|:::.||:..:...:.|:||:|::|.|..|:|.:|:.:.|..::.|..|...||::.::.
 Frog   129 RKLKVLNVNGNRLHNISRVSFSNLAALIKLRLDGNDIQNLQGSPFSALSNLLYLHLENNKITNIS 193

  Fly   209 ASNLWHLHALKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSD 273
            .:....|..|:.|.:|.|...|:|..:|..|:.|..|::.||.:.:|..|.|.||..|..|.||.
 Frog   194 KNAFTGLGKLRLLSLSGNPQSFLRQPTFLPLRALSTLTMAGNQLQQLGPSLFNGLQRLSRLVLSS 258

  Fly   274 NNLTMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTH 338
            |.::::.|:....|..|..|:|.||:..|||....:.|.:|..|:||| :.:..:....|.....
 Frog   259 NQISVIQTKTFLGLDLLQELHLDGNKLVQLPEGVLVPLHNLEVLNLSR-NAISHLHPETFKGLMR 322

  Fly   339 LQTLHLNNNPQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCNCSL 403
            |:.|.|.:| .|..:..:.|.|||             .||          :|.|..|...|:|.|
 Frog   323 LRVLDLQHN-MLRYLSGQTFAGNP-------------VLY----------RLQLDGNRWSCDCQL 363

  Fly   404 LWLWRLVTGNFEGVDPGMEHAAGGAVAALAKEADDEELADEATAVASTDDGVAALAAYIAEQHIV 468
            |.|...:.|..        |:....:....:..:.:::|.:             ...|:.:.::.
 Frog   364 LDLKHWILGTL--------HSRSRMLTVFVQCFEPQKVAGK-------------YLDYLEDSYLW 407

  Fly   469 NA----LHTTEPSAYELATSS-SNRNSGILRMDRQQI------GCDIWRDKVRTRRKLLTMSEGE 522
            :.    :.||.....::.||: |:.|.|:.:..:..|      |.|..|.:.:|..|.|.:.   
 Frog   408 DVGGCRISTTPAGQEQMMTSTLSDGNIGVHQARKGDIDLIVVTGADNLRVQPKTEEKSLQLP--- 469

  Fly   523 ITCPAHIVTVVCAVITCLLVAMIGISVLYYLRFVKRRRKLLHERGPMRTSKSIINVHDRILQGHN 587
             |.|:.:...                    |..:..|::.|..:.|..|:|.             
 Frog   470 -TPPSEVSPA--------------------LETLALRQQALVTKWPSSTNKD------------- 500

  Fly   588 PGGLGLGMSMTLGGGNHVNGLGMTL-NYPHHAQTLQAHHHYHQAMPLQSHGGNGNHEYQQTTL-- 649
                  |.:...|......|.|.:: |...|::.|  |.......|.||       :.:|.::  
 Frog   501 ------GTAKNRGLETSRKGKGKSVKNSAEHSRKL--HLVAQPVHPTQS-------KVKQVSVLI 550

  Fly   650 -------PQLDKLELERYLAAQT---------IANEYRALKPWELPVKEADDEPEHLYERFDHYE 698
                   |..:.:..|:.:...|         :.:.:..|:.     .:..|:|       .|::
 Frog   551 PASSNLPPNSESMHSEKPVRLDTPSVVPNLEDVRSVFTTLQH-----DDTTDKP-------IHHD 603

  Fly   699 YPDTHTM------------SKLKQAASLNHSNSSAGP--SPVPPSSGKP---HVVYVXRGRGTGE 746
            .|.|.|:            :..:||....|..:...|  :|.|.....|   :.:|:        
 Frog   604 NPATKTLHLSHSDTLLPNYNSFQQAGDPMHPAAETLPQVAPFPSLLSDPCEFNKLYL-------- 660

  Fly   747 RVSQINTDIEMVG 759
                :|..:|.||
 Frog   661 ----VNLSVESVG 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 7/23 (30%)
leucine-rich repeat 98..121 CDD:275380 9/22 (41%)
LRR_8 120..180 CDD:404697 20/59 (34%)
leucine-rich repeat 122..145 CDD:275380 8/22 (36%)
leucine-rich repeat 146..169 CDD:275380 6/22 (27%)
LRR <161..>354 CDD:227223 59/192 (31%)
leucine-rich repeat 170..193 CDD:275380 7/22 (32%)
leucine-rich repeat 194..217 CDD:275380 5/22 (23%)
leucine-rich repeat 218..265 CDD:275380 17/46 (37%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 9/22 (41%)
leucine-rich repeat 314..338 CDD:275380 6/23 (26%)
LRR_8 337..397 CDD:404697 14/59 (24%)
leucine-rich repeat 339..360 CDD:275380 6/20 (30%)
trilXP_002933436.2 leucine-rich repeat 35..58 CDD:275378 5/22 (23%)
leucine-rich repeat 59..82 CDD:275380 7/23 (30%)
leucine-rich repeat 83..106 CDD:275380 9/22 (41%)
internalin_A 84..>375 CDD:380193 95/323 (29%)
leucine-rich repeat 107..130 CDD:275380 8/22 (36%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 155..178 CDD:275380 7/22 (32%)
leucine-rich repeat 179..202 CDD:275380 5/22 (23%)
leucine-rich repeat 203..226 CDD:275380 8/22 (36%)
leucine-rich repeat 227..250 CDD:275380 9/22 (41%)
leucine-rich repeat 251..274 CDD:275380 7/22 (32%)
leucine-rich repeat 275..298 CDD:275380 9/22 (41%)
leucine-rich repeat 299..320 CDD:275380 6/21 (29%)
leucine-rich repeat 323..346 CDD:275380 9/36 (25%)
fn3 662..737 CDD:394996 4/8 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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