DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fili and chadl

DIOPT Version :9

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:XP_002934783.2 Gene:chadl / 100491048 XenbaseID:XB-GENE-6050564 Length:721 Species:Xenopus tropicalis


Alignment Length:843 Identity:178/843 - (21%)
Similarity:299/843 - (35%) Gaps:239/843 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LLLLLLTLVIL---PPETTAFCPSKCQCLGGEANSRAL--CVDAALEDVPIQLNPETKYINLTVN 83
            ::..:|||:|:   .|.....||..|.|    .|.|..  |.:..|.:||..:...|:.::|..|
 Frog     1 MMWFVLTLIIMSAVKPLLCDRCPRVCIC----DNIRTFVACTNKNLTEVPTSIPQYTQKLDLRGN 61

  Fly    84 RIRTLE----FSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLT 144
            .::.:.    .|:|:   |..|.|.:..||.:..........|..|||..|.:|.:::.:|.||:
 Frog    62 DLKVIPNGAFLSVPY---LTHLSLQKCNIERIEEGALRGLGRLVYLNLGSNKISFIYQESFDGLS 123

  Fly   145 NLLLLDLSFNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPA 209
            :|..|.|..||:|.:.|.|...|..|..|.|.:|.:|.|.|..|:|                   
 Frog   124 SLQQLVLEKNRLEEIKPGAFGQLGFLNFLHLGDNFLVYLPDMLFQG------------------- 169

  Fly   210 SNLWHLHALKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDN 274
                 |..:|.:.:|.|::..|.|:                        ||..|.:||.|.|..|
 Frog   170 -----LQQVKWIRLSNNMINVVSNE------------------------AFAALPNLKRLSLDHN 205

  Fly   275 NLTMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHL 339
            .|..:||..||::|.||.|.||.|..:.:...| :.:..|::|.|                    
 Frog   206 ELQYLPTDALSRMSGLTRLELGWNPMTFISEEA-VQMASLKQLFL-------------------- 249

  Fly   340 QTLHLNNNPQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCNCSL- 403
                  ||..:.|:..:.|:.:|.:..:.:.:|.::|: .....::.|.:|.|..|.::|:|.| 
 Frog   250 ------NNMAIQDLSFKAFERSPQLSLIDLSNNQIRTI-QVLAGLEHLNRLNLTGNAIRCDCELR 307

  Fly   404 ---LWLWRLVTGNFEGV-------DPGMEHAAGGAVAALA---------KEAD----------DE 439
               .|      .:|..|       .||  |..|..:.:|.         .|.|          :|
 Frog   308 SFKQW------ADFSKVKVDLFCSGPG--HFRGDHLDSLRAIDLKCGNFPEEDYNLPPITPKPEE 364

  Fly   440 ELADEATAVASTDDGVAALAAYIAEQ----------------HIVNALHTTEPSAYELATSSSNR 488
            |.:...:.....||..........:|                ::.||:|.        ...|..:
 Frog   365 ESSCPRSCDCKPDDKHVLCENKFLQQIPKRFPVDTTLLDLRKNVFNAIHK--------GAFSEMK 421

  Fly   489 NSGILRMDRQQIGCDIWRDKVRTRRKL--LTMSEGEITCPAHIVTVVCAVITCLLVAMIGISVLY 551
            |...|.:...||. :|........:.|  |.:|..      |:.::...|...  ..|||...|.
 Frog   422 NVASLHLQSCQIN-EIQPGAFAGMKNLVYLYLSHN------HLSSIDPEVFRD--APMIGYLYLD 477

  Fly   552 YLRFVKRRRKLLHERGPMRTSKSIINVH----------DRILQGHNPGGLGLGMSMTLGGGNHVN 606
            :.||.:.      .:|..:...::.::|          |..:.|.:.      :......||::|
 Frog   478 HNRFTRL------SKGTFKFLPNLFSLHMQYNSISSLSDNFMSGADK------LHWVYMTGNNIN 530

  Fly   607 GLGMTLNYPHHAQTLQAHHHYHQAMPLQSHGGNGNHEYQQTTLPQLDKLELERYLAAQTIANEYR 671
            .:..:. :.::....:.|...:..|.:.:....|        ||.|::|.|.:.| .::|.|.. 
 Frog   531 YIASSA-FKNNKDLEKLHLDENLLMEVPTQAIKG--------LPLLNELRLSKNL-IRSIGNGA- 584

  Fly   672 ALKPWELPVKEADDEPEHLYERFDHYEYPDTHTMSKLKQA-ASLNHSNSSAGPSPVPPSSGKPHV 735
                 .|||..:   .:|||......|...:...|.|.|. .||:..|:.....|    :.||. 
 Frog   585 -----FLPVARS---LQHLYLNDLGLEQISSGGFSGLGQGIKSLHLDNNKLQNIP----NMKPF- 636

  Fly   736 VYVXRGRGTGERVSQINTDIEMVGL--NHLH-----LHHHHHNNNNNYR---GCVQSAKASGQ 788
                             |.:|::.|  |..|     |..|...|:.|.:   .|...:.|.||
 Frog   637 -----------------TGLEVINLANNPFHCDCRLLPLHKWINSLNLKVGATCAAPSSAKGQ 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 5/25 (20%)
leucine-rich repeat 98..121 CDD:275380 5/22 (23%)
LRR_8 120..180 CDD:404697 22/59 (37%)
leucine-rich repeat 122..145 CDD:275380 9/22 (41%)
leucine-rich repeat 146..169 CDD:275380 9/22 (41%)
LRR <161..>354 CDD:227223 45/192 (23%)
leucine-rich repeat 170..193 CDD:275380 9/22 (41%)
leucine-rich repeat 194..217 CDD:275380 1/22 (5%)
leucine-rich repeat 218..265 CDD:275380 8/46 (17%)
leucine-rich repeat 266..289 CDD:275380 10/22 (45%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
leucine-rich repeat 314..338 CDD:275380 3/23 (13%)
LRR_8 337..397 CDD:404697 11/59 (19%)
leucine-rich repeat 339..360 CDD:275380 4/20 (20%)
chadlXP_002934783.2 PPP1R42 37..232 CDD:411060 67/245 (27%)
leucine-rich repeat 53..76 CDD:275380 4/22 (18%)
leucine-rich repeat 77..100 CDD:275380 5/22 (23%)
leucine-rich repeat 101..124 CDD:275380 9/22 (41%)
leucine-rich repeat 125..148 CDD:275380 9/22 (41%)
leucine-rich repeat 149..172 CDD:275380 10/46 (22%)
leucine-rich repeat 173..196 CDD:275380 8/46 (17%)
leucine-rich repeat 197..220 CDD:275380 10/22 (45%)
leucine-rich repeat 221..243 CDD:275380 7/22 (32%)
leucine-rich repeat 244..267 CDD:275380 7/48 (15%)
leucine-rich repeat 268..287 CDD:275380 2/19 (11%)
PCC 272..>346 CDD:188093 17/82 (21%)
leucine-rich repeat 290..337 CDD:275380 14/54 (26%)
inl_like_NEAT_1 <359..>647 CDD:411101 62/357 (17%)
leucine-rich repeat 399..422 CDD:275380 4/30 (13%)
LRR_8 422..481 CDD:404697 14/67 (21%)
leucine-rich repeat 423..446 CDD:275380 4/23 (17%)
leucine-rich repeat 447..470 CDD:275380 5/30 (17%)
leucine-rich repeat 471..494 CDD:275380 6/28 (21%)
leucine-rich repeat 495..518 CDD:275380 3/22 (14%)
leucine-rich repeat 519..542 CDD:275380 3/23 (13%)
leucine-rich repeat 543..566 CDD:275380 4/30 (13%)
leucine-rich repeat 567..591 CDD:275380 9/30 (30%)
leucine-rich repeat 592..615 CDD:275380 6/22 (27%)
leucine-rich repeat 617..639 CDD:275380 7/43 (16%)
leucine-rich repeat 640..651 CDD:275378 3/10 (30%)
LRRCT 647..693 CDD:214507 10/36 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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