DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fili and lrrc3b

DIOPT Version :10

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:XP_004915441.1 Gene:lrrc3b / 100488288 XenbaseID:XB-GENE-960247 Length:259 Species:Xenopus tropicalis


Alignment Length:237 Identity:63/237 - (26%)
Similarity:104/237 - (43%) Gaps:54/237 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 WLCGAIPVLLLL-LLTLVILPPETTAFCPSKCQC--LGGEANSRALCVDAALEDVPIQLNPETKY 77
            ||..::.:.||| ...|:||...:.:.||..|.|  .||   ....|.:|.|:::|..:.|||  
 Frog     7 WLTRSLSMCLLLQSFVLMILCFHSASMCPKGCICSHTGG---LNVSCSNANLKEIPRDIPPET-- 66

  Fly    78 INLTVNRIRTLEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKG 142
                                 .:|.|..|.|.::.::.|:...:|:.||||:|.:..:.:|:|||
 Frog    67 ---------------------VLLYLDSNQITSIPNEIFKDLHQLKVLNLSKNGIEFIDEHSFKG 110

  Fly   143 LTNLL-LLDLSFNRIETVHPTALSDLASLVEL-------DLTNNNIV-SLEDNCFKGMNTLEVLV 198
            :...| .||||.|:|::||..|.|:|.....:       |.|...:: |:..|.....|     |
 Frog   111 VAETLQTLDLSDNQIKSVHKNAFSNLKGRARIANNPWHCDCTLQQVLRSMSSNHETASN-----V 170

  Fly   199 FRNNRLLDVPA----------SNLWHLHALKSLDMSLNLVEF 230
            .....:||..|          ::|.:||. |:.|.::.:..|
 Frog   171 ICKTSVLDEHAGRAFFTNANDADLCNLHK-KTTDYAMLVTMF 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 LRR 71..>348 CDD:443914 45/179 (25%)
leucine-rich repeat 75..97 CDD:275378 1/21 (5%)
leucine-rich repeat 98..121 CDD:275380 5/22 (23%)
leucine-rich repeat 122..145 CDD:275380 10/22 (45%)
leucine-rich repeat 146..169 CDD:275380 12/23 (52%)
leucine-rich repeat 170..193 CDD:275380 4/30 (13%)
leucine-rich repeat 194..217 CDD:275380 6/32 (19%)
leucine-rich repeat 218..265 CDD:275380 3/13 (23%)
leucine-rich repeat 266..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..338 CDD:275380
LRR_8 337..397 CDD:404697
leucine-rich repeat 339..360 CDD:275380
lrrc3bXP_004915441.1 LRRNT 33..68 CDD:214470 13/60 (22%)
leucine-rich repeat 48..65 CDD:275378 4/16 (25%)
leucine-rich repeat 66..89 CDD:275378 6/45 (13%)
LRR_8 69..125 CDD:404697 21/55 (38%)
leucine-rich repeat 90..113 CDD:275378 10/22 (45%)
leucine-rich repeat 115..137 CDD:275378 11/21 (52%)
Blue background indicates that the domain is not in the aligned region.

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