DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fili and lrrc3

DIOPT Version :10

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_001107114.1 Gene:lrrc3 / 100001372 ZFINID:ZDB-GENE-080327-13 Length:266 Species:Danio rerio


Alignment Length:261 Identity:70/261 - (26%)
Similarity:113/261 - (43%) Gaps:46/261 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 PVLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRAL--CVDAALEDVPIQLNPETKYINLTVNR 84
            |::..|||.::.|...:.| ||..|.|  .|.||..:  |....||::|..|..:|..:.|:.|.
Zfish    20 PLIFRLLLAVICLSVPSFA-CPKSCHC--SERNSLTVVQCSSRNLEEIPPDLPHDTVSLQLSSNH 81

  Fly    85 IRTLE----FSLPFYMKLEILDLSQNIIETLGSKNFEYQSE-LRTLNLSRNLVSSLHKHAFKGLT 144
            |..:.    .:||:   |:.||||:|.|||:.:..|:..|| ||||:||.|.:..:.|.||..|.
Zfish    82 ITKIPNQAFKNLPW---LQELDLSRNAIETVDAGAFKGVSESLRTLDLSHNHMQGVPKEAFARLH 143

  Fly   145 NLLLLDLSFNRIETVHPTALSDLASLVELDLTNNNIVSL---EDNCFKGMNTLEVLVFRNNRLLD 206
            ..:.|..:....|......|.:|    .||....|.||.   :...:.|...::||         
Zfish   144 AKISLSNNPWHCECTLQEVLREL----RLDPETVNEVSCHTSDQEKYAGKPVIQVL--------- 195

  Fly   207 VPASNLWHLHALKSLDMSL-------------NLVEFVRN---DSFEGLKELLALSVQGNVMSEL 255
            ....|..:.|. |:.|:::             .::.:||:   |:...|:.|.:|.....:..:.
Zfish   196 DSGINFCNFHH-KTTDVAMFVTMFGWFTMVIAYVIYYVRHNQEDARRHLEYLKSLPSSSQISKDF 259

  Fly   256 D 256
            |
Zfish   260 D 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 LRR 71..>348 CDD:443914 53/210 (25%)
leucine-rich repeat 75..97 CDD:275378 6/25 (24%)
leucine-rich repeat 98..121 CDD:275380 10/22 (45%)
leucine-rich repeat 122..145 CDD:275380 11/22 (50%)
leucine-rich repeat 146..169 CDD:275380 4/22 (18%)
leucine-rich repeat 170..193 CDD:275380 6/25 (24%)
leucine-rich repeat 194..217 CDD:275380 3/22 (14%)
leucine-rich repeat 218..265 CDD:275380 9/55 (16%)
leucine-rich repeat 266..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..338 CDD:275380
LRR_8 337..397 CDD:404697
leucine-rich repeat 339..360 CDD:275380
lrrc3NP_001107114.1 LRR <50..210 CDD:443914 50/176 (28%)
leucine-rich repeat 51..74 CDD:275378 6/22 (27%)
LRR 1 71..92 4/20 (20%)
LRR_8 74..131 CDD:404697 24/59 (41%)
leucine-rich repeat 75..95 CDD:275378 4/19 (21%)
LRR 2 95..116 10/23 (43%)
leucine-rich repeat 96..120 CDD:275378 11/23 (48%)
LRR 3 120..141 10/20 (50%)
leucine-rich repeat 121..144 CDD:275378 11/22 (50%)
Blue background indicates that the domain is not in the aligned region.

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