DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and Rem2

DIOPT Version :10

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_073176.2 Gene:Rem2 / 64626 RGDID:69081 Length:341 Species:Rattus norvegicus


Alignment Length:433 Identity:101/433 - (23%)
Similarity:158/433 - (36%) Gaps:142/433 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 ETRSYCTSEPRL---SETETPPQRRKLSQRRPQTHAHRKSNAFLD----------------VPTM 136
            ||.:.|:|..|.   |.|.||.....|.:::|:     |..|.||                :|..
  Rat    14 ETVALCSSSSRQASPSGTPTPEADTTLLKQKPE-----KLLAELDRGGPPPAPGVPRRRGSMPVP 73

  Fly   137 NMHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSRSNSLAPSSPMHTRNGVGGLGGVAGG 201
            ..|.||.....:::|.....|:|                                          
  Rat    74 YKHQLRRAQAVDELDWPPQASSS------------------------------------------ 96

  Fly   202 GSSLGLGCGYNGGSSSNGFGNANAQENHQPVEFYRVEMLGSAGVGKQALLSQFRTSDCINAYDGP 266
            |||..||.|....:..:|              .::|.:||.:||||..|...|......||::..
  Rat    97 GSSDSLGSGEAALAQKDG--------------VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEME 147

  Fly   267 ECDDA-EQNVSIILNGTESELKFLTGNPESKDE---------LEQADAFLVVYSCIDKESFTRAK 321
            ..:|. |:.:.:    .:.|:..:..:...:.:         |:..||||:|:|..|:.||::..
  Rat   148 NSEDTYERRIMV----DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP 208

  Fly   322 QILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAG 386
            :.|.||:........|.|||.||.||||||.||.::|:.:|.|...|.||.|..::||..||..|
  Rat   209 ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 273

  Fly   387 TLTQIRLKKDQVQLQLNPKKSKDKDKNKFKENTNIETVETDNCLTDLKADDGG----PRDANSPA 447
            .:.||||::.                                     :...||    |...:.||
  Rat   274 AVRQIRLRRG-------------------------------------RGHAGGQRPEPSSPDGPA 301

  Fly   448 HWYKSRSVMLASMKARQMLTWILGKEDSKFKH----CENLQVL 486
            ...:..|:   :.||::.|..::.:....||.    |.:|.||
  Rat   302 PPTRRESL---TKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop containing Nucleoside Triphosphate Hydrolases 235..>396 CDD:476819 57/170 (34%)
Rem2NP_073176.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..72 15/62 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..106 8/63 (13%)
RGK 116..341 CDD:206715 70/268 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..309 5/63 (8%)

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