DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and Rrad

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_062636.2 Gene:Rrad / 56437 MGIID:1930943 Length:307 Species:Mus musculus


Alignment Length:365 Identity:101/365 - (27%)
Similarity:146/365 - (40%) Gaps:92/365 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 TFSASKGGIINRGDSFRR-RRSRSNSLAPSSPMHTRN------------GVGGLGGVAGGGSSLG 206
            |.:...|...:||....| ||..|....|:.|:|.|:            ..|.|...|.|..:.|
Mouse     2 TLNGGSGASGSRGAGRERDRRRGSTPWGPAPPLHRRSMPVDERDLQAALAPGSLATTAAGTRTQG 66

  Fly   207 LGCGY-NGGSSSNGFGNANAQENHQPVEFYRVEMLGSAGVGKQALLSQFRTSDCINAYDGPECDD 270
            ....: .|.|.|...|.:.::|.     .|:|.:||:.||||.||...|...:     ||||.:.
Mouse    67 QRLDWPEGSSDSLSSGGSGSEEG-----VYKVLLLGAPGVGKSALARIFGGIE-----DGPEAEA 121

  Fly   271 AEQNV--SIILNGTESELK-----------FLTGNPESKDELEQADAFLVVYSCIDKESFTRAKQ 322
            |....  ||.::|.|:.|.           :|.|:.     :...||:::|||..||.||.:|.:
Mouse   122 AGHTYDRSITVDGEEASLLVYDIWEQDGGCWLPGHC-----MAMGDAYVIVYSITDKGSFEKASE 181

  Fly   323 ILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGT 387
            :..:|:........|.|||.||.||.|||.||..:|:..|..|..||||.|..::||...|..|.
Mouse   182 LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 246

  Fly   388 LTQIRLKKDQVQLQLNPKKSKDKDKNKFKENTNIETVETDNCLTDLKADDGGPRDANSPAHWYKS 452
            :.||||::|          ||:.:..:                      ..|.|...|       
Mouse   247 VRQIRLRRD----------SKEDNARR----------------------QAGTRRRES------- 272

  Fly   453 RSVMLASMKARQMLTWILGKED------SKFKHCENLQVL 486
                 ...||::.|..|:.:..      :|.|.|.:|.||
Mouse   273 -----LGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 63/173 (36%)
RradNP_062636.2 RGK 91..307 CDD:206715 77/269 (29%)
Calmodulin-binding. /evidence=ECO:0000250 277..296 3/18 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8675
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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