DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and rap1b

DIOPT Version :10

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_955827.1 Gene:rap1b / 321107 ZFINID:ZDB-GENE-030131-9662 Length:184 Species:Danio rerio


Alignment Length:193 Identity:55/193 - (28%)
Similarity:88/193 - (45%) Gaps:31/193 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 YRVEMLGSAGVGKQALLSQFRTSDCINAYDGPECDDAEQNVSIILNGTESELKFL-TGNPES--- 295
            |::.:|||.||||.||..||.....:..|| |..:|:.:. .:.::|.:..|:.| |...|.   
Zfish     4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDSYRK-QVEVDGQQCMLEILDTAGTEQFTA 66

  Fly   296 -KD-ELEQADAFLVVYSCIDKESFTRAKQILSRLQDM--DLLRHR-----PTILVANKIDLARSR 351
             :| .::....|.:|||...:.:|       :.|||:  .:||.:     |.|||.||.||...|
Zfish    67 MRDLYMKNGQGFALVYSITAQSTF-------NDLQDLREQILRVKGTDDVPMILVGNKCDLEDER 124

  Fly   352 AVSAQDGKCVACTFGA-KFIEVSVGINHNCDELLAGTLTQIRLKKDQVQLQLNPKKSKDKDKN 413
            .|..:.|:.:|..:.: .|:|.|.....|.:|:....:.||..|        .|...|.:.|:
Zfish   125 VVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRK--------TPVTGKPRKKS 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop containing Nucleoside Triphosphate Hydrolases 235..>396 CDD:476819 52/174 (30%)
rap1bNP_955827.1 Rap1 3..167 CDD:133375 51/171 (30%)
Effector region. /evidence=ECO:0000305 32..40 4/8 (50%)

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