DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgk3 and CG13375

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001162628.1 Gene:CG13375 / 30976 FlyBaseID:FBgn0040370 Length:306 Species:Drosophila melanogaster


Alignment Length:329 Identity:72/329 - (21%)
Similarity:121/329 - (36%) Gaps:60/329 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 RGDSFRRRRSRSNSL-----APSSPMHTRNGVGGLGGVAGGGSSLGLGCGYNGGSSSNGFGNANA 225
            ||...|||.|...|.     |...|  .|:.||                  ...:..:..|.|||
  Fly     2 RGRHLRRRFSLQPSFMKDDNAEDKP--KRDKVG------------------RNNAVDDAIGPANA 46

  Fly   226 QENHQPVEFYRVEMLGSAGVGKQALLSQFRTSDCINAYDGPECDDAEQNVSIILNGTESELKFL- 289
            :        :::.::|||.|||.::::||..:.....|.....:..:.|.||.  |....|..| 
  Fly    47 R--------HKIVVMGSAKVGKTSIITQFLYNTFSTKYKRTIEEMHQGNFSIA--GVSLTLDILD 101

  Fly   290 -TGNPESKD----ELEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPTILVANKIDL-- 347
             .|:.|...    .:..||||::||...|..:|...:.|..::.:.......|.::|.|||||  
  Fly   102 TAGSYEFPAMRALSISSADAFILVYDVTDATTFEEVRTIRDQIHETKATTAVPIVVVGNKIDLLA 166

  Fly   348 --ARSRAVS-AQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQ----------IRLKKDQVQ 399
              ...|.|. |.....|...:...|:|.|...|.|..::....|.|          :|.::..:.
  Fly   167 DGETEREVEYATTESVVTVDWENGFVEASASSNENITQVFKELLAQAKITYNLSPALRRRRQSLP 231

  Fly   400 LQL-NPKKSKDKDKNKFKENTNI---ETVETDNCLTDLKADDGGPRDANSPAHWYKSRSVMLASM 460
            .|: |...|.....::..::.|.   .:..|.:......:..|....|.:||.....:.:...|:
  Fly   232 QQIGNNGPSTPLHHHQHTQHHNSGGGTSASTSSAAAAASSSGGSGSHAPTPAQLQHLQRIQERSL 296

  Fly   461 KARQ 464
            .|::
  Fly   297 GAKR 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 45/181 (25%)
CG13375NP_001162628.1 RAS 48..215 CDD:214541 44/168 (26%)
Ras_dva 49..239 CDD:206714 47/191 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453020
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.