DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and Rem1

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_033073.1 Gene:Rem1 / 19700 MGIID:1097696 Length:297 Species:Mus musculus


Alignment Length:352 Identity:94/352 - (26%)
Similarity:137/352 - (38%) Gaps:100/352 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 SFRRRRSRSNSL------------APSSP-MHTRNGVGGLGGVAGGGSSLGLGCGYNGGS-SSNG 219
            :.|||.|....|            |||:| .|.|.           |.|:.|.......| :.:|
Mouse    12 TLRRRASTPLPLSSRGHQPGRLCTAPSAPSQHPRL-----------GQSVSLNPPVRKPSPAQDG 65

  Fly   220 FGNANAQENHQPVEFYRVEMLGSAGVGKQALLSQFRTSDCINAYDGPECDDAEQ-----NVSIIL 279
            :.:.::.........|||.:||..||||.:|.|.|.        :..:.|..||     ..::.:
Mouse    66 WSSESSDSEGSWEALYRVVLLGDPGVGKTSLASLFA--------EKQDRDPHEQLGGVYERTLSV 122

  Fly   280 NGTESELKFL-TGNPESKDE-------LEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHR 336
            :|.::.|..: |...|..||       |:...|:::|||..|:.||..|.::..:|:......|.
Mouse   123 DGEDTTLVVMDTWEAEKLDESWCQESCLQAGSAYVIVYSIADRSSFESASELRIQLRRTHQANHV 187

  Fly   337 PTILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQVQLQ 401
            |.|||.||.||||.|.||.::|:..|..|..||||.|..:.||..||..|.:.|:||::      
Mouse   188 PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVTELFEGVVRQLRLRR------ 246

  Fly   402 LNPKKSKDKDKNKFKENTNIETVETDNCLTDLKADDGGPRDANSPAHWYK-------SRSVMLAS 459
                          ::|...||              ..||...|.....:       :||....:
Mouse   247 --------------QDNAAPET--------------PSPRRRASLGQRARRFLARLTARSARRRA 283

  Fly   460 MKARQMLTWILGKEDSKFKHCENLQVL 486
            :|||.             |.|.||.||
Mouse   284 LKARS-------------KSCHNLAVL 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 61/173 (35%)
Rem1NP_033073.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73 16/71 (23%)
RGK 81..297 CDD:206715 76/270 (28%)
small_GTPase 81..245 CDD:197466 60/171 (35%)
Calmodulin-binding 267..286 2/18 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8675
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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