DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgk3 and F20D6.8

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_505105.2 Gene:F20D6.8 / 184726 WormBaseID:WBGene00017637 Length:370 Species:Caenorhabditis elegans


Alignment Length:401 Identity:100/401 - (24%)
Similarity:154/401 - (38%) Gaps:104/401 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 YRRRRPATRSQSARITSGARSVRQKTKAQQQQQQQQHTLQETRSYCTSEPRLSETETPPQRRKLS 115
            |...:|.|.|.|   :|.:.||                  ...|.....|..|.:..|  ||.|.
 Worm    22 YHHHQPRTSSVS---SSNSNSV------------------NANSTMLLSPNFSPSPCP--RRSLP 63

  Fly   116 QRRPQTHAHRKS-------NAFLDVPTMNMHHLRVNDD---DEDVD------RLRTFSASKGGII 164
            . .|..:.||:|       .||..  |.....|.|||:   ||:.:      |||:|....|.|.
 Worm    64 S-TPLPNGHRRSLPPTPPTPAFSS--TSEQEELFVNDEQINDEEPEFPIRSTRLRSFDLRDGHIF 125

  Fly   165 NRGDSFRRRRSRSNSLAPSSPMHTRNGVGGLGGVAGGGSSLGLGCGYNGGSSSNG-------FGN 222
            ::|  |:::.|..:.|:.:                        |.|:..|.:...       |.:
 Worm   126 DKG--FQKKPSEKDFLSVN------------------------GTGFRRGDNRRATCPDIFLFDS 164

  Fly   223 ANAQENHQPVEFYRVEMLGSAGVGKQAL---LSQFRTSDCINAYDGPECDDAEQN-------VSI 277
            .|....|..:..|     |:...||::|   :..|.||      ..||..|.::|       .:.
 Worm   165 QNCLMKHVVLRIY-----GARNCGKKSLANRIHHFATS------MAPERVDPDENGNDYTKMTTF 218

  Fly   278 ILNGTESELKFLTGNPESKDELEQADA-FLVVYSCIDKESFTRAKQILSRLQDMDLLRHRP--TI 339
            :|||.|..|:.|..:........|:.. ::|:|:..:::||..|.|||.|:...:|....|  ..
 Worm   219 LLNGREVTLEILLESTLENSPFRQSKTLYIVMYNMDNRQSFIYATQILERITLANLNNPVPLQLF 283

  Fly   340 LVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQI-----RLKKDQVQ 399
            |:.||.||.|::.:|..:||.||.||...|:|||..:..|.:|.....|.::     |.:...|:
 Worm   284 LIGNKCDLKRNQVISTNEGKSVARTFKCDFLEVSALLGMNTEETWTTILKELQEPSERRRPSWVE 348

  Fly   400 LQLNPKKSKDK 410
            ..||..|...|
 Worm   349 RMLNRGKGMAK 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 51/178 (29%)
F20D6.8NP_505105.2 Ras 170..335 CDD:278499 51/175 (29%)
P-loop_NTPase 172..335 CDD:304359 50/173 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R16928
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

Return to query results.
Submit another query.