DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and REM2

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_016876547.1 Gene:REM2 / 161253 HGNCID:20248 Length:373 Species:Homo sapiens


Alignment Length:395 Identity:92/395 - (23%)
Similarity:154/395 - (38%) Gaps:98/395 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 LDVPTMNMHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSR-----SNSLAPSSP----- 185
            |:.|.:::.|:     .|.:..:.:||.....|:....:..::..:     ..|..||:|     
Human    38 LEQPGLSLLHM-----VEHIPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPRR 97

  Fly   186 -----------MHTRNGVGGLG---GVAGGGSSLGLGCGYNGGSSSNGFGNANAQENHQPVEFYR 236
                       :.....|..|.   ..:..|||..||.|....:..:|              .::
Human    98 RGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDG--------------IFK 148

  Fly   237 VEMLGSAGVGKQALLSQF--RTSDCINAYDGPECDDAEQNVSIILNGTESELKFLTGNPESKDE- 298
            |.::|.:||||..|...|  ...|..:..:.|..|..|:.:.:    .:.|:..:..:...:.: 
Human   149 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPAEDTYERRIMV----DKEEVTLVVYDIWEQGDA 209

  Fly   299 --------LEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPTILVANKIDLARSRAVSA 355
                    |:..||||:|:|..|:.||::..:.|.||:........|.|||.||.||||||.||.
Human   210 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 274

  Fly   356 QDGKCVACTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQVQLQLNPKKSKDKDKNKFKENTN 420
            ::|:.:|.|...|.||.|..::||..||..|.:.||||::.:                       
Human   275 EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR----------------------- 316

  Fly   421 IETVETDNCLTDLKADDGGPRDANSPAHWYKSRSVMLASMKARQMLTWILGKEDSKFKH----CE 481
                   |.....:.|.|.|.....||   :..|:   :.||::.|..::.:....||.    |.
Human   317 -------NHAGGQRPDPGSPEGPAPPA---RRESL---TKKAKRFLANLVPRNAKFFKQRSRSCH 368

  Fly   482 NLQVL 486
            :|.||
Human   369 DLSVL 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 56/171 (33%)
REM2XP_016876547.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.920

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