DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and gem

DIOPT Version :9

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001090822.1 Gene:gem / 100038040 XenbaseID:XB-GENE-483370 Length:299 Species:Xenopus tropicalis


Alignment Length:390 Identity:93/390 - (23%)
Similarity:155/390 - (39%) Gaps:112/390 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 LSQRRPQTHAHRKSNAFLDVPTMNMHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSRSN 178
            ::.||..|.|:.:....:.....|:|..:    .:..:..|.::|:...|.|..:..||..|..:
 Frog     5 VTMRRSNTTANVQQRWSIPADAKNIHAQK----KQHSNLTRKYTANNTSINNSAEYCRRSWSSDS 65

  Fly   179 SLAPSSPMHTRNGVGGLGGVAGGGSSLGLGCGYNGGSSSNGFGNANAQENHQPVEFYRVEMLGSA 243
            |   .|.:.:.:|                                        ..:|||.::|..
 Frog    66 S---DSVISSESG----------------------------------------STYYRVVLIGEQ 87

  Fly   244 GVGKQALLSQFRTSDCINAYDGPECDDAEQNV---SIILNGTESELKFLTGNPESKDE------- 298
            ||||..|.:.|  :...::.|| :||...:|.   :::::| ||....|....|:|.:       
 Frog    88 GVGKSTLANIF--AGVPDSVDG-DCDMLAENTYERNLMVDG-ESATLILIDMWENKAQDNWIREQ 148

  Fly   299 -LEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVA 362
             ::..||:|:|||..|:.||.:|.::..:|:........|.|||.||.||.|.|.||..:|:..|
 Frog   149 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 213

  Fly   363 CTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQVQLQLNPKKSKDKDKNKFKENTNIETVETD 427
            ..|..||||.|..:.||..||..|.:.|:||::|          ||:|::.:.......|::   
 Frog   214 VVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD----------SKEKNERRLAYQKRRESI--- 265

  Fly   428 NCLTDLKADDGGPRDANSPAHWYKSRSVMLASMKARQMLTWILGKEDS------KFKHCENLQVL 486
                        |:                   |||:....|:.|::.      |.|.|.:|.||
 Frog   266 ------------PK-------------------KARRFWGKIVAKKNKNMAFKLKSKSCHDLSVL 299

  Fly   487  486
             Frog   300  299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop_NTPase 235..>396 CDD:422963 60/171 (35%)
gemNP_001090822.1 RGK 79..299 CDD:206715 75/267 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D301527at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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