DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk3 and gem

DIOPT Version :10

Sequence 1:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001090822.1 Gene:gem / 100038040 XenbaseID:XB-GENE-483370 Length:299 Species:Xenopus tropicalis


Alignment Length:390 Identity:93/390 - (23%)
Similarity:155/390 - (39%) Gaps:112/390 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 LSQRRPQTHAHRKSNAFLDVPTMNMHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSRSN 178
            ::.||..|.|:.:....:.....|:|..:    .:..:..|.::|:...|.|..:..||..|..:
 Frog     5 VTMRRSNTTANVQQRWSIPADAKNIHAQK----KQHSNLTRKYTANNTSINNSAEYCRRSWSSDS 65

  Fly   179 SLAPSSPMHTRNGVGGLGGVAGGGSSLGLGCGYNGGSSSNGFGNANAQENHQPVEFYRVEMLGSA 243
            |   .|.:.:.:|                                        ..:|||.::|..
 Frog    66 S---DSVISSESG----------------------------------------STYYRVVLIGEQ 87

  Fly   244 GVGKQALLSQFRTSDCINAYDGPECDDAEQNV---SIILNGTESELKFLTGNPESKDE------- 298
            ||||..|.:.|  :...::.|| :||...:|.   :::::| ||....|....|:|.:       
 Frog    88 GVGKSTLANIF--AGVPDSVDG-DCDMLAENTYERNLMVDG-ESATLILIDMWENKAQDNWIREQ 148

  Fly   299 -LEQADAFLVVYSCIDKESFTRAKQILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVA 362
             ::..||:|:|||..|:.||.:|.::..:|:........|.|||.||.||.|.|.||..:|:..|
 Frog   149 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 213

  Fly   363 CTFGAKFIEVSVGINHNCDELLAGTLTQIRLKKDQVQLQLNPKKSKDKDKNKFKENTNIETVETD 427
            ..|..||||.|..:.||..||..|.:.|:||::|          ||:|::.:.......|::   
 Frog   214 VVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD----------SKEKNERRLAYQKRRESI--- 265

  Fly   428 NCLTDLKADDGGPRDANSPAHWYKSRSVMLASMKARQMLTWILGKEDS------KFKHCENLQVL 486
                        |:                   |||:....|:.|::.      |.|.|.:|.||
 Frog   266 ------------PK-------------------KARRFWGKIVAKKNKNMAFKLKSKSCHDLSVL 299

  Fly   487  486
             Frog   300  299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk3NP_001286670.1 P-loop containing Nucleoside Triphosphate Hydrolases 235..>396 CDD:476819 60/171 (35%)
gemNP_001090822.1 RGK 79..299 CDD:206715 75/267 (28%)

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