DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snoo and Skor1

DIOPT Version :10

Sequence 1:NP_609164.3 Gene:Snoo / 5740414 FlyBaseID:FBgn0085450 Length:1223 Species:Drosophila melanogaster
Sequence 2:NP_766034.2 Gene:Skor1 / 207667 MGIID:2443473 Length:964 Species:Mus musculus


Alignment Length:1256 Identity:246/1256 - (19%)
Similarity:364/1256 - (28%) Gaps:508/1256 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PPRELS---------QPILSVADAGCGELYETKLEGKTIGCFSVGGEMRLCLPQFLNNVLNDFSL 152
            |.||.|         ||....:.....::.||.|.|..|....:.|:.||||.|..|.:|.::|.
Mouse    49 PGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSY 113

  Fly   153 EQINRIFDELGIYCSQCTHDQLVEFKAAKILPSDVKASGLITRTDAERLCAALL--HRSDRNSYV 215
            .:|:.....|||.|.|||..||...:.|..:|...:..|:||:.:|||||.:.|  |:..:   :
Mouse   114 NEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPK---L 175

  Fly   216 PIESLAKGALSFHVYHKCFGKCEGICTPDMYSYQKPTCIKCLECDGWFSPQKFVGHVHRKFENHT 280
            | |:.|     |.|.|:|.....|...|..|:..:..||||..|..:|||.||:.|.||.     
Mouse   176 P-ENFA-----FDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRT----- 229

  Fly   281 CHWGFDSRNWHDYLHVALDVENREKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLMDDGML- 344
                      .|..:...|..|...::      :.::|.: ..|..||.|.....:.:.:.|.. 
Mouse   230 ----------PDAKYTQPDAANFNSWR------RHLKLSD-KSATDELSHAWEDVKAMFNGGTRK 277

  Fly   345 ---------GSGPVLGLAGHPHGLVGA---------LAPPPPPPMKQPQMDIPSGKKQLQQLKGA 391
                     |.|...|..|...|..|.         :||.|||            .|.|:     
Mouse   278 RTFSLQGGGGGGANSGSGGAGKGGAGGGGGPGCGSEMAPGPPP------------HKSLR----- 325

  Fly   392 TVAASALEYQYQVMYAHCVQKEREREREHLPHSHPLPRQHRAV-LVATTPYPHLPQYPTPPTLNS 455
                             |.:.|...     |...|.|...||: |.|....|..|..|     ..
Mouse   326 -----------------CGEDEAAG-----PPGPPPPHPQRALGLAAAASGPAGPGGP-----GG 363

  Fly   456 SSAFR--PWGPDTTKAFLHAYGATLSSLPYACQEPPELQNPERVVRSTDKRYAERTYQPNVALAP 518
            |:..|  |..|..:|.|     ..|..||     ||...:|          |.   :.....|.|
Mouse   364 SAGVRSYPVIPVPSKGF-----GLLQKLP-----PPLFPHP----------YG---FPTAFGLCP 405

  Fly   519 RKSILSKERDKDRERMEREVMERQRLREKETDHQVVHIKQERSQTPT------------------ 565
            :|                             |..|:...:.:....|                  
Mouse   406 KK-----------------------------DDPVLVAGEPKGGPGTGSSGGAGTAAGAGGPGAG 441

  Fly   566 --PPTASP------------PDGVV----------------------------LPLDVVEPPHPS 588
              ||.|.|            |.|..                            ||:    ||:|:
Mouse   442 HLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPV----PPYPA 502

  Fly   589 SSGSNSPLPAHLPAAPATAPPNAGGAPPTPTNLRNMRSPEEFSAGGSNEITSSTS--PHHQQSSH 651
            :......:.|.:.||.|.|...|||.  .|.:|......:|.|.|......|:.|  |..:..: 
Mouse   503 AQSQAKAVAAAVAAAAAAAAAAAGGG--GPESLDGAEPAKEGSLGTEERCPSALSRGPLDEDGA- 564

  Fly   652 HQVVQPTAG----APPPSQHIIATVNQHAKLLPSSSSLPNGNGSSSLAATNNEPSRIRINKNLMS 712
            .:.:.|:.|    .|||.....:.|:....::..:.|:....||:. .|..:.|:|        .
Mouse   565 DEALPPSLGPLPPPPPPPARKSSYVSAFRPVVKDAESIAKLYGSAR-EAYGSGPAR--------G 620

  Fly   713 QQPVVAVSGMTPHHHQHHPTHMHHFSHGYYKSQASSPTQSSSAGLNLSTHSSNVVSSPHHATQPK 777
            ..|.....|                  ||.     ||...|..            ||.:|:..| 
Mouse   621 PVPGTGTGG------------------GYV-----SPDFLSEG------------SSSYHSASP- 649

  Fly   778 THHSSVGSGNHGLQNGKPHLGSEFELSTDTDDTDSLNGEPDSSAMLPPWEQAVESLRETRPKDRE 842
                                        |.|..|    ||:                        
Mouse   650 ----------------------------DVDTAD----EPE------------------------ 658

  Fly   843 RVLLILQRLLQENDQYRYNNIQLSELLHKQDAHIADLTEQLQRYRRQFEEQVCKVDLRKMPFKHQ 907
                                                                  ||:....|   
Mouse   659 ------------------------------------------------------VDVESNRF--- 666

  Fly   908 TRLENVVEAGRGEAEEDEELEEDEMEDRANNNNQQELSPLIKAPANGLRRSVTPPNCCASEGG-- 970
                           .|||..:|:.|.||.:...   .|....||.       ||:..:|...  
Mouse   667 ---------------PDEEGAQDDTEPRAPSTGG---GPDGDQPAG-------PPSVTSSGADGP 706

  Fly   971 -DCEKPDEPESKR-------IKLQVGEKAEDKQV-ENEESPSNGTESHDLEKLEKNDDKTDPTNN 1026
             |....|.|..:|       |:...|:...|..| ..|.||.:|  .::|.         :|...
Mouse   707 TDSADGDSPRPRRRLGPPPAIRSAFGDLVADDVVRRTERSPPSG--GYELR---------EPCGP 760

  Fly  1027 PKSPQPSQISSDDEMEEDDEDEDEEDEDEEVQVEA------PHSSALATPPTATTPLSPDSAATA 1085
            ...|..:::.:             .:.||.|:..|      |.:|.|.||.|.......:.:.||
Mouse   761 LGGPGAAKVYA-------------PERDEHVKSTAVAAALGPAASYLCTPETHEPDKEDNHSTTA 812

  Fly  1086 GQLFDSSNSSDESSMKK--------------AQMSACHALEKMSSNVGSDENNQRLAE------- 1129
            ..|....:.||:.|:.:              ..::....:||...|:..:|..:.|.|       
Mouse   813 DDLETRKSFSDQRSVSQPSPANTDRGEDGLTLDVTGTQLVEKDIENLAREELQKLLLEQMELRKK 877

  Fly  1130 -----ESQEDEAEEDPEEEDSDDDEMPLQQRQ-----------QQQRQRVAPQNVLSGPSVAGHH 1178
                 :|.:|..::..:.|.:..:|| :||.|           |:::.|.|.|..|.....|.||
Mouse   878 LEREFQSLKDNFQDQMKRELAYREEM-VQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHH 941

  Fly  1179 -----PAPAH--------PPM 1186
                 ..|.|        ||:
Mouse   942 FSCKMLTPRHCTGNCSFKPPL 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SnooNP_609164.3 DHD_Ski_Sno 116..206 CDD:410782 34/89 (38%)
c-SKI_SMAD_bind 226..317 CDD:198114 23/90 (26%)
AF-4 637..>789 CDD:461550 26/157 (17%)
Skor1NP_766034.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 45..72 6/22 (27%)
DHD_Skor 77..167 CDD:410783 34/89 (38%)
c-SKI_SMAD_bind 180..272 CDD:198114 29/118 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 278..365 25/130 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 414..461 5/46 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 525..587 16/64 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 610..768 50/351 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 794..842 10/47 (21%)
OmpH 860..>935 CDD:461098 16/75 (21%)

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