DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snoo and skil

DIOPT Version :9

Sequence 1:NP_001097115.1 Gene:Snoo / 5740414 FlyBaseID:FBgn0085450 Length:1223 Species:Drosophila melanogaster
Sequence 2:XP_002931592.1 Gene:skil / 100492636 XenbaseID:XB-GENE-486095 Length:643 Species:Xenopus tropicalis


Alignment Length:645 Identity:181/645 - (28%)
Similarity:262/645 - (40%) Gaps:181/645 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VTPMISTVLKKYQTSATKSLQGPGHALTTAGVLDIVTNGRSESPGLNGKCQASPPVVALIKKEIL 69
            :.|.:...|.::..|:..||.||.           ..:.|.....:      ||.|       .|
 Frog    64 LNPGLKHTLAQFNLSSRSSLGGPA-----------AFSARFSHENM------SPTV-------FL 104

  Fly    70 SSPEPQDLHHHECSTRGTPPQIYSPATPPRELSQPILSVADAGCGELYETKLEGKTIGCFSVGGE 134
            ..|.|| :|         |..::.|:....||:|               |:|||::|.||.||||
 Frog   105 PLPSPQ-IH---------PGPLFIPSDSSTELTQ---------------TELEGESISCFMVGGE 144

  Fly   135 MRLCLPQFLNNVLNDFSLEQINRIFDELGIYCSQCTHDQLVEFKAAKILPSDVKASGLITRTDAE 199
            .||||||.||:||.||||:|||.:.||:.||||:||.|||...|...|||.:..:.||||.|||:
 Frog   145 KRLCLPQVLNSVLRDFSLQQINIVCDEMYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQ 209

  Fly   200 RLCAALLHRS---DRNSYVP----IESLAKGALSFHVYHKCFGKCEGICTPDMYSYQKPTCIKCL 257
            |||.|||...   ...|.:|    :..|.:...:|.|.|.|.|||:|:..|.::|.....||:||
 Frog   210 RLCNALLRPQTFPQNGSLLPAKNSLAQLKETGSAFEVEHDCLGKCQGLFAPHLFSQPDAPCIQCL 274

  Fly   258 ECDGWFSPQKFVGHVHRKFENHTCHWGFDSRNWHDYLHVA---LDVENREKYQIILDQLKEVELK 319
            ||.|.||.|.||.|.||..:..||||||||..||.|:|::   ||....:|...:|.::|     
 Frog   275 ECYGMFSTQTFVMHSHRSPDKRTCHWGFDSAKWHCYVHLSPKYLDTPEGKKMNALLKEMK----- 334

  Fly   320 EMHKAQRELEHKKRKAEMLMDDGMLGSGPVLGLAGHPHGLVGALAPPPPPPMKQPQMDIPSGKKQ 384
                   |..:||.:.:.:...|             .|  :..|..|...|:.: |.|.|:.:..
 Frog   335 -------EKFNKKNQPKRIQPKG-------------EH--IQTLELPSWYPVIK-QEDDPTSRPH 376

  Fly   385 LQQLKGATVAASALEYQYQVMYAHCVQ--------KEREREREHLPHSHP---LPRQ-----HRA 433
            |       :..|...|.|..:.|..|.        ||.:..|:.:..|.|   |.:|     |::
 Frog   377 L-------LHPSYYLYMYDKVVAPNVSLTATVSQCKEAKIGRKEVAPSKPSVELEKQARSGKHKS 434

  Fly   434 VLVATTPYPHL-----PQYPTPPTLNSSSAFRPWGPD------------------------TTKA 469
            |    |.||.|     .:....|.:.:|:..:|...|                        ..|.
 Frog   435 V----TSYPELSIEEQERVDLKPDIKTSNIKQPNTVDGEKHESACNKDILCVDDKSQIMEEVVKT 495

  Fly   470 FLHAYGATLSSLPYACQEPPEL--------------------QNPERVVRSTDKRY---AERTYQ 511
            ||...    ..|.|..|:..::                    ||.::...|....:   .|..|.
 Frog   496 FLKQQ----EKLNYILQKKQQIQMEVELLSNSKTMKDLTVEQQNLQKEFESLQNEHMQKMEELYD 556

  Fly   512 PNVALAPR-KSI--------LSKERDKDRERMEREVMERQRLREKETDHQVV--HIKQER 560
            ....|..: |.:        |:.:|||:.:...:....||||.:.|.|.:.:  .:::||
 Frog   557 EQRDLEEKLKQVKKQKCSCDLNTDRDKETQYANQLTELRQRLDQAEADRRELQDELRRER 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SnooNP_001097115.1 Ski_Sno 114..207 CDD:280577 55/92 (60%)
c-SKI_SMAD_bind 226..317 CDD:198114 42/93 (45%)
skilXP_002931592.1 Ski_Sno 118..217 CDD:367087 59/113 (52%)
c-SKI_SMAD_bind 243..338 CDD:198114 43/106 (41%)
Smc <486..>609 CDD:224117 23/126 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 119 1.000 Domainoid score I5731
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002607
OrthoInspector 1 1.000 - - otm47674
Panther 1 1.100 - - LDO PTHR10005
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

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