DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snoo and ski

DIOPT Version :9

Sequence 1:NP_001097115.1 Gene:Snoo / 5740414 FlyBaseID:FBgn0085450 Length:1223 Species:Drosophila melanogaster
Sequence 2:XP_004916211.1 Gene:ski / 100486949 XenbaseID:XB-GENE-494028 Length:719 Species:Xenopus tropicalis


Alignment Length:976 Identity:242/976 - (24%)
Similarity:346/976 - (35%) Gaps:340/976 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PMISTVLKKYQTSATKSLQGPGHALTTAGVLDIVTNGRSESPGLNGKCQASPPVVALIKKEILSS 71
            |.:...|:::..|:..||.||.                                       ..|:
 Frog    13 PGLQKTLEQFHLSSMSSLGGPA---------------------------------------AFSA 38

  Fly    72 PEPQDLHHHECSTRGTPPQIYSPATPPREL-SQPILSVADAGCGELYETKLEGKTIGCFSVGGEM 135
            ...||::..|.......|.::.|:.||..: ..|:...:|... |..||.|||:||.||.||||.
 Frog    39 RWAQDMYKKESGKEPPEPVLHLPSQPPPVIPGGPLFMPSDRST-ERCETILEGETISCFVVGGEK 102

  Fly   136 RLCLPQFLNNVLNDFSLEQINRIFDELGIYCSQCTHDQLVEFKAAKILPSDVKASGLITRTDAER 200
            ||||||.||:||.||||:|||.:.|||.:|||:||.|||...|...|||....:.||||:|||||
 Frog   103 RLCLPQILNSVLRDFSLQQINAVCDELHVYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAER 167

  Fly   201 LCAALLHRSDRNSYVPIESLAK------GAL-------SFHVYHKCFGKCEGICTPDMYSYQKPT 252
            ||.|||:   ..||.|  ..||      |.|       ||.|||:|||||.|:..|::|.:....
 Frog   168 LCNALLY---GGSYPP--RCAKKSDFPPGPLELELTESSFRVYHECFGKCRGLFVPELYGHPSAP 227

  Fly   253 CIKCLECDGWFSPQKFVGHVHRKFENHTCHWGFDSRNWHDYLHVALDVENR--EKYQIILDQLKE 315
            ||:||:|...:.|.|||.|.|:..||.||||||||.||..|:.:|.|....  |:.|..|.:|.|
 Frog   228 CIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLARDNPGAGGEEEQARLSRLLE 292

  Fly   316 VELKEMHKAQRELEHKKRKAEMLMDDGMLGSGPVLGLAGHPHGLVGALAPPPPPPMKQPQMD--I 378
             |:||......:.   ||||..:..:                           |..|:|:.|  |
 Frog   293 -EMKEKFDYSNKY---KRKAARISSE---------------------------PVAKKPKADDSI 326

  Fly   379 PSGKKQLQQLKGATVAASALEYQYQVMYAHCVQKEREREREHLPHSHPLPRQHRAVLVATTPYPH 443
            .......::.|.::...:.........|.|                   |||.            
 Frog   327 IHSPSSAEKDKSSSWLRNLSNNNKNTGYVH-------------------PRQR------------ 360

  Fly   444 LPQYPTPPTLNSSSAFRPWGPDTTKAFLHAYGATLSS-LPYACQEPPELQNPERVVRSTDKRYA- 506
                        .||||||.|     .:.|....||: ||             .::|.:...|. 
 Frog   361 ------------LSAFRPWSP-----AISANDKELSAHLP-------------ALIRDSFYNYKS 395

  Fly   507 -ERTYQPNVALAPRKSILSKERDKDRERMEREVMERQRLREKETDHQVVHIKQERSQTPTPPTAS 570
             |....|||||||              .::::|:                             .|
 Frog   396 FENLVAPNVALAP--------------PVQQKVI-----------------------------TS 417

  Fly   571 PPDGVVLPLDVVEPPHPSSSGSNSPLPAHLPAAPATAPPNAGGAPPTPTNLRNMRSPEEFSAGGS 635
            ||....:|........|..|....| .|.||.|| .||     |||.|.......|..|......
 Frog   418 PPCVPAVPRSTQSSGSPPQSRKRRP-TAELPIAP-EAP-----APPAPIREEEKESETEIEVESR 475

  Fly   636 NE--ITSSTSPHHQQSSHHQVVQPTAGAPPPSQHIIATVNQHAKLLPSSSSLPNGNGSSSLAATN 698
            .|  .|||.                                      ||.|.|:...|||.    
 Frog   476 EECMFTSSL--------------------------------------SSLSSPSFTSSSSA---- 498

  Fly   699 NEPSRIRINKNLMSQQPVVAVSGMTPHHHQHHPTHMHHFSHGYYKSQASSPTQSSSAGLNLSTHS 763
                     |.|.|       .||.                        :||             
 Frog   499 ---------KELSS-------PGML------------------------APT------------- 510

  Fly   764 SNVVSSPHHATQPKTHHSSVGSGNHGLQNGKPHLGSEFELSTDTDDTDSLNGEPDSSAMLPPWEQ 828
              |:::.:........|||      ||:....||....:...|:.:..               |:
 Frog   511 --VINTSYEVASHSDQHSS------GLEAELEHLRQALDSGLDSKEAK---------------EK 552

  Fly   829 AVESLRETRPKDRERVLLILQ--RLLQENDQYRYNNIQLSELLHKQDAHIADLTEQLQRYRRQFE 891
            .:..:.:.|.|..|::...||  |.||:  :..:..:...|.|.:......:|.::::|.|.:.|
 Frog   553 FLHEVVKMRVKQEEKLNAALQAKRSLQQ--ELEFLRVAKKEKLREATEAKRNLRKEIERLRAENE 615

  Fly   892 EQVCKVDLRKMPFKHQTRLENVV-------EAGRGEAEEDEELEEDEME-DRANNNNQQELSPLI 948
            :::.:.:..::..|.:......:       ||||...:...::||.:.: ..|.|:.:|..:.|:
 Frog   616 KKMKEANESRLRLKRELEQARQIRVCDKGCEAGRIRVKYSAQIEELQSKLQHAENDREQLRTDLV 680

  Fly   949 K 949
            :
 Frog   681 Q 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SnooNP_001097115.1 Ski_Sno 114..207 CDD:280577 59/92 (64%)
c-SKI_SMAD_bind 226..317 CDD:198114 44/92 (48%)
skiXP_004916211.1 Ski_Sno 75..173 CDD:367087 59/98 (60%)
c-SKI_SMAD_bind 201..299 CDD:198114 47/98 (48%)
Smc <529..>718 CDD:224117 30/170 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 119 1.000 Domainoid score I5731
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002607
OrthoInspector 1 1.000 - - otm47674
Panther 1 1.100 - - O PTHR10005
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

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