DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snoo and skilb

DIOPT Version :9

Sequence 1:NP_001097115.1 Gene:Snoo / 5740414 FlyBaseID:FBgn0085450 Length:1223 Species:Drosophila melanogaster
Sequence 2:NP_001124141.1 Gene:skilb / 100170835 ZFINID:ZDB-GENE-080723-40 Length:629 Species:Danio rerio


Alignment Length:660 Identity:176/660 - (26%)
Similarity:254/660 - (38%) Gaps:201/660 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GKCQASPPVVALIKKEI----LSSPEPQDLHHHECSTRGTPPQIYSPATPPRELSQPI------- 105
            ||.:|:|.:...:|..:    |||         :||..|  |..::......:|:.|:       
Zfish    57 GKAEANPDLSPGLKHTLAQFSLSS---------QCSLGG--PAAFTSHHGQYKLAPPLAHGGIAG 110

  Fly   106 --LSVADAGCGELYETKLEGKTIGCFSVGGEMRLCLPQFLNNVLNDFSLEQINRIFDELGIYCSQ 168
              |.|......:|....|||::|.|||||||:||||||.||.:|.||||:|||.:.|:|.:|||:
Zfish   111 GPLLVPPDSSTDLSMCSLEGESISCFSVGGELRLCLPQLLNTILRDFSLQQINSVCDQLYLYCSR 175

  Fly   169 CTHDQLVEFKAAKILPSDVKASGLITRTDAERLCAALLHRSDRNSYVPI-----ESLAKGALSFH 228
            |...||...|...|||....:.||||.|||:|||..|||..:.    |:     |...:.:..|.
Zfish   176 CDATQLHILKVLGILPPGTPSCGLITLTDAQRLCNTLLHPGEE----PLDREQEEKDGEESGGFW 236

  Fly   229 VYHKCFGKCEGICTPDMYSYQKPTCIKCLECDGWFSPQKFVGHVHRKFENHTCHWGFDSRNWHDY 293
            |.|:|.|||:|:..|.:||.....|::|.:|...|..::||.|.||:.:..||||||||..|..|
Zfish   237 VEHQCLGKCQGLFVPQLYSSPDAPCVRCSQCRMLFCTERFVMHSHRQPDKRTCHWGFDSAKWACY 301

  Fly   294 LHVA---LDVENREKYQIILDQLKEVELKEMHKAQRELEHKKR---------------------K 334
            |.:|   |...:.||.|..|:.:|.       |.|:|    ||                     |
Zfish   302 LQLAQRHLGTADEEKLQQSLEDMKA-------KFQQE----KRQPHVGVSSPAFVFDSRLLAGLK 355

  Fly   335 AEMLMDDGMLGS-------GPV-LGLAGH----PHGLVGALAPPPPPPMK--------------- 372
            .|...||.|..|       .|. .|||.|    |...:|:    |...|:               
Zfish   356 EEPSNDDLMWQSWYQYTHDKPAGNGLAQHSGCVPEKEMGS----PGTEMQTDTQDEKNQDAHDTD 416

  Fly   373 -----------------------QPQMDIPSGKKQLQQLKGATVAASALEYQYQ------VMYAH 408
                                   |...|.|..|:.::..|...|......|..|      .:|. 
Zfish   417 TKTLTFTGQEKSVQSDDGSADEWQRMADSPDCKRSVEHSKDNMVMELLQMYSAQHDKLQSTLYR- 480

  Fly   409 CVQKEREREREHLPHSHPLPR--QHRAVLVATTPYPHLPQYPTPPTLNSSSAFRPWGPDTTKAFL 471
              ||:.|:|.:.|.....|.|  .|..:....|.                               
Zfish   481 --QKQLEKELQALRQGETLDRCDLHGELEAVQTE------------------------------- 512

  Fly   472 HAYGATLSSLPYACQEPPELQNPERVVRS----------TDKRYAERTYQPNVALAPRKSILSKE 526
            ||            |...|:|..:|.::|          ..|:.:..|:|..: .|.:.|.|.:.
Zfish   513 HA------------QRLGEVQQEQRKLKSRLDQLRQQECRCKQLSTETHQETI-YARQLSELRQR 564

  Fly   527 RDK---DRERMEREVMERQRLREKETDHQVVHIKQERSQTPTPPTASPPDGVVLPLDVVEPPHPS 588
            .|:   |||.::.|:...:..||: .:..:..:||:..::..|...          |.::.|..|
Zfish   565 LDRAEEDREELQEELRREREARER-LERTISELKQQMRESTHPAQH----------DSMDSPSSS 618

  Fly   589 SSGSNSPLPA 598
            |.......||
Zfish   619 SYSDTHMSPA 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SnooNP_001097115.1 Ski_Sno 114..207 CDD:280577 51/92 (55%)
c-SKI_SMAD_bind 226..317 CDD:198114 38/93 (41%)
skilbNP_001124141.1 Ski_Sno 115..214 CDD:280577 52/98 (53%)
c-SKI_SMAD_bind 234..329 CDD:198114 39/101 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 117 1.000 Domainoid score I5862
eggNOG 1 0.900 - - E1_28KYF
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 227 1.000 Inparanoid score I3453
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002607
OrthoInspector 1 1.000 - - otm24490
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10005
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.960

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