DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34345 and p4ha3

DIOPT Version :9

Sequence 1:NP_001097101.1 Gene:CG34345 / 5740402 FlyBaseID:FBgn0085374 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_021322008.1 Gene:p4ha3 / 563281 ZFINID:ZDB-GENE-041010-4 Length:616 Species:Danio rerio


Alignment Length:523 Identity:127/523 - (24%)
Similarity:228/523 - (43%) Gaps:101/523 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SIRALSELREIENSYMEHLNNYVSFLQQKIKTLRIF---INSLTPNYLDHKVDRYKYVSNPLNSF 101
            |:.::::....|...::||..|:....|:::.::.|   :.||.....:...|.   ::||:.:|
Zfish    27 SMLSVNQAVSAERKLIDHLIIYIEHEAQRLEDIKRFFSRVTSLHDGIYNEPSDP---IANPIAAF 88

  Fly   102 GLLRRAHQDWPKLIAYLKDQGNIKVDIEEMNKLINRTPHANDMEEALMGMDRIEHFYDLKSSDMA 166
            .|::|...:|..::...:.:.||||..|:..::.:..|...|:..|..|:.|::..|:|.    .
Zfish    89 KLVKRLKSEWLNVVHSTEAEENIKVLREDYRRMESSLPKLEDLRGAAHGLMRLQDVYNLH----V 149

  Fly   167 QGLVAG--QQL-----------SSRMSASDCLALADYMYKRSEFRRAAEWYRIALSVFT----KP 214
            :.||.|  ||:           |..:|..||..:....|...::..:..|:..|:.:|.    .|
Zfish   150 ESLVRGHFQQISDPVDFYKLSVSDMLSGDDCFLVGKVAYDLEDYYHSVLWFEEAVRLFRGTEWSP 214

  Fly   215 KN---------NIAFKFYAPKRKELEKMFVISRLQEGSVENLTDCLKE-LSQDPNNSLVHLRPRK 269
            :|         ::||                |..:.|::.:.....:| |..||.|..||....|
Zfish   215 ENEGTLEDALDHLAF----------------SHFKTGNISHALSLSRELLLHDPMNRRVHFNVEK 263

  Fly   270 SPTMI---------------------------EQGCQ--GKFP---PGPQLVCRYNSTTTPFMRI 302
            ...::                           ||.||  |..|   ..|.|.|.|.:..:|.:.:
Zfish   264 YEKLLNENLPATSSGLTLKRPDGIYLRTRNAYEQLCQTKGSQPKHFENPSLFCDYFTNGSPALFL 328

  Fly   303 APLKEEEISRDPLIWLYHDVIYDSEIAQLTNVT----REEMILGTTTNYTTPDRVNRLFHIKVTD 363
            .|::.|.||..|.:.|:|..:..:|...:....    |..::.......|...|:::...:|.:.
Zfish   329 QPIRREIISLQPYVVLFHGFVTQAEAKNIRKYAMPGLRRSVVASGMNQATAEYRISKSAWLKESA 393

  Fly   364 DD-GGKLDKTLVNRMADISGLDV--GNTTTLARINYGLGGYFQEHSDYM---DIKLYPELTEEGD 422
            .: .||||:    |:..::||:|  .....|..:|||:||:::.|.|:.   ...||...|  |:
Zfish   394 HEVVGKLDQ----RITLVTGLNVQPPYAEYLQVVNYGIGGHYEPHFDHATSDSSPLYRLKT--GN 452

  Fly   423 RLMTFLFYMTDVPVGGTTIFPGAQLAIQPKKGSALFWYNLHNNGDPNLLTRHAVCPTIVGSRWVL 487
            |:.|.:.|::.|..||:|.|..|..::...:.:||||:|||.||..|:.|.||.||.|||::|.:
Zfish   453 RVATIMIYLSPVQAGGSTAFIYANFSVPVVQNAALFWWNLHKNGQGNVDTLHAGCPVIVGNKWGM 517

  Fly   488 VKS 490
            .|:
Zfish   518 FKN 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34345NP_001097101.1 P4Ha_N 40..170 CDD:285528 28/132 (21%)
P4Hc 324..489 CDD:214780 53/174 (30%)
p4ha3XP_021322008.1 P4Ha_N 27..157 CDD:311993 31/136 (23%)
P4Hc 350..519 CDD:214780 53/174 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583403
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1438683at2759
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

Return to query results.
Submit another query.