DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spok and C4H

DIOPT Version :9

Sequence 1:NP_001104460.2 Gene:spok / 5740359 FlyBaseID:FBgn0086917 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_180607.1 Gene:C4H / 817599 AraportID:AT2G30490 Length:505 Species:Arabidopsis thaliana


Alignment Length:600 Identity:134/600 - (22%)
Similarity:227/600 - (37%) Gaps:168/600 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFAIAITIILISYVFLLLKCKQKAFVVIGLLYQEKKYQCFDQAPGPHPWPIIGN-------INLL 66
            |.|:.:.:||.:.:..|...|.|.                  .|||.|.||.||       :|..
plant    10 LIAVFVAVILATVISKLRGKKLKL------------------PPGPIPIPIFGNWLQVGDDLNHR 56

  Fly    67 GRFQYNPFYGFGTLTKKYGDIYSLSLGHTRCIVVNNVDLIKEVLNKNGKYFGGRP-----DFFRY 126
            ....|         .||:||::.|.:|....:||::.||.||||...|..||.|.     |.|. 
plant    57 NLVDY---------AKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVVFDIFT- 111

  Fly   127 HKLFGGDRNNSLALCDWSQLQQKRRNLARRHCSPRESSSYFSKMSEIGGLEVNQLLDQL-TNISS 190
                  .:...:....:.:..:|.|.:.   ..|..::....:..|....|...:::.: .|..|
plant   112 ------GKGQDMVFTVYGEHWRKMRRIM---TVPFFTNKVVQQNREGWEFEAASVVEDVKKNPDS 167

  Fly   191 GYPCDV--KPLILAASANMFCQYMCSVRFNYSDKGFQKIIEYFDEIF----------------WE 237
            .....|  |.|.|....||| :.|...||...|          |.:|                :|
plant   168 ATKGIVLRKRLQLMMYNNMF-RIMFDRRFESED----------DPLFLRLKALNGERSRLAQSFE 221

  Fly   238 INQGYSFDYIPWLVPF------YCNHIS--RIVHWSASIRKFILERIVNHRESNININEPDKDFT 294
            .|.|   |:||.|.||      .|..:.  ||    |..:|:.::.......|....:|..|...
plant   222 YNYG---DFIPILRPFLRGYLKICQDVKDRRI----ALFKKYFVDERKQIASSKPTGSEGLKCAI 279

  Fly   295 DALLKSLKEDKNVSRNTIIFMLEDFIGGHSAVGNLVML---------ALAYIAKNPTIALHIRNE 350
            |.:|:: ::...::.:.:::::|:.        |:..:         .:|.:..:|.|...:|||
plant   280 DHILEA-EQKGEINEDNVLYIVENI--------NVAAIETTLWSIEWGIAELVNHPEIQSKLRNE 335

  Fly   351 VDTVSAKGIRRICLYDMNVMPYTMASISEVLRYSSS-P-IVPHVAMEDTVIKGFGVRKGTIVFIN 413
            :|||...|: ::...|::.:||..|.:.|.||...: | :|||:.:.|..:.|:.:...:.:.:|
plant   336 LDTVLGPGV-QVTEPDLHKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVN 399

  Fly   414 NYVLNMSESFWNHPEQFDPERFLENNFTNNKESGLKCDDNKRTEFIRKNDNDGSTKSKKYGKQNL 478
            .:.|..:.:.|..||:|.||||.|      :||           .:..|.||.            
plant   400 AWWLANNPNSWKKPEEFRPERFFE------EES-----------HVEANGNDF------------ 435

  Fly   479 NNKLLKKSIPQFLPFSVGKRTCIGQSLVRGFGFLLLANIIQNYNV-------------NSADFSK 530
                      :::||.||:|:|.|..|......:.:..::||:.:             ....||.
plant   436 ----------RYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSL 490

  Fly   531 IKLEKSSIAL-PKKC 544
            ..|..|.|.: |:.|
plant   491 HILNHSIIVMKPRNC 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spokNP_001104460.2 p450 52..549 CDD:299894 126/556 (23%)
C4HNP_180607.1 PLN02394 3..505 CDD:215221 133/598 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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