DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spok and Cyp2c40

DIOPT Version :9

Sequence 1:NP_001104460.2 Gene:spok / 5740359 FlyBaseID:FBgn0086917 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_034134.3 Gene:Cyp2c40 / 13099 MGIID:1306815 Length:491 Species:Mus musculus


Alignment Length:550 Identity:152/550 - (27%)
Similarity:241/550 - (43%) Gaps:113/550 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 YVFLLLKCKQKAFVVIGLLYQEKKYQCFDQAPGPHPWPIIGNINL-----LGRFQYNPFYGFGTL 80
            :|.|:| |  .:|:::..|::::..: .:..|||.|.|||||.:|     :|:...|       .
Mouse     4 FVVLVL-C--LSFLLVLSLWRQRSAR-GNLPPGPTPLPIIGNYHLIDMKDIGQCLTN-------F 57

  Fly    81 TKKYGDIYSLSLGHTRCIVVNNVDLIKEVLNKNGKYFGGR---PDFFRYH--KLFGGDRNNSLAL 140
            :|.||.:::|..|....:|::..:.|||.|..:|:.|.||   |.|.:..  |..|....|.   
Mouse    58 SKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEEFSGRGRIPVFDKVSTGKGIGFSHGNV--- 119

  Fly   141 CDWSQLQQKRRNLARRHCSPRESSSYFSKMSEIGGLEVNQLLDQLTNISSGYPCDVKPLILAASA 205
              |...:....|..|.....:.:..  :|:.|    |...|:.:|.. ::|.|||.:.:|..|..
Mouse   120 --WKATRVFTVNTLRNLGMGKRTIE--NKVQE----EAQWLMKELKK-TNGSPCDPQFIIGCAPC 175

  Fly   206 NMFCQYMCSVRFNYSDKGFQKIIEYFDEIFWEI--NQGYS-FDYIPWLVPFYC----NHISRIVH 263
            |:.|..:...||:|.||.|..:|...:|. .||  :.|.. |:.:|.|:. ||    |.:.:...
Mouse   176 NVICSIVFQNRFDYKDKDFLSLIGKVNEC-TEILSSPGCQIFNAVPILID-YCPGSHNKLFKNHT 238

  Fly   264 WSASIRKFILERIVNHRESNININEPDKDFTDALLKSLKEDKNVSR-----NTIIFMLEDFI-GG 322
            |   |:.::|.:|..|.|| :::..| :||.|..|...::...:..     ..:..::.|.: ||
Mouse   239 W---IKSYLLGKIKEHEES-LDVTNP-RDFIDYFLIQRRQKNGIEHMDYTIEHLATLVTDLVFGG 298

  Fly   323 HSAVGNLVMLALAYIAKNPTIALHIRNEVDTVSAKGIRRICLYDMNVMPYTMASISEVLRY-SSS 386
            ...:.:.:..||..:.|:..|...::.|:|.|..:. |..|:.|.|.||||.|.:.||.|| ...
Mouse   299 TETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRH-RSPCMQDRNHMPYTNAMVHEVQRYIDLG 362

  Fly   387 PI-VPHVAMEDTVIKGFGVRKGTIVFIN-NYVLNMSESFWNHPEQFDPERFLENNFTNNKESGLK 449
            |. |.|....||..:.:.:.|||.|..: ..||:.|..|.| ||.|||..||::|          
Mouse   363 PNGVVHEVTCDTKFRNYFIPKGTQVMTSLTSVLHDSTEFPN-PEVFDPGHFLDDN---------- 416

  Fly   450 CDDNKRTEFIRKNDNDGSTKSKKYGKQNLNNKLLKKSIPQFLPFSVGKRTCIGQSLVRGFGFLLL 514
                            |:.|...|                |:|||.|||.|:|:||.|...||.|
Mouse   417 ----------------GNFKKSDY----------------FVPFSAGKRICVGESLARMELFLFL 449

  Fly   515 ANIIQNYNV-------------NSADFSKI 531
            ..|:||:.:             ..:.||||
Mouse   450 TTILQNFKLKPLVDPKDIDMTPKHSGFSKI 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spokNP_001104460.2 p450 52..549 CDD:299894 145/518 (28%)
Cyp2c40NP_034134.3 p450 30..487 CDD:333810 145/519 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45226
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.