DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLO2 and Kcnma1

DIOPT Version :9

Sequence 1:NP_001097259.2 Gene:SLO2 / 5740325 FlyBaseID:FBgn0261698 Length:1878 Species:Drosophila melanogaster
Sequence 2:XP_006518654.1 Gene:Kcnma1 / 16531 MGIID:99923 Length:1323 Species:Mus musculus


Alignment Length:1473 Identity:282/1473 - (19%)
Similarity:468/1473 - (31%) Gaps:533/1473 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 LTYLGYKGNIWQQILSFHFILELVTTIPFALTIVHPPLRNLFIPIFLN-CWLAKRSLENMFNDLH 277
            |.::.....:|       |.||:.:.:.| .|:  ||   :|:.::|| .||..|.|        
Mouse   231 LRFIAANDKLW-------FWLEVNSVVDF-FTV--PP---VFVSVYLNRSWLGLRFL-------- 274

  Fly   278 RAMQKSQ-SALSQQLTIL---------------------SATLLCLVFTSVCGIQHFQRAGHRHL 320
            ||::..| |.:.|.|.||                     :|..:.||..|....::||  .::.|
Mouse   275 RALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQ--NNQAL 337

  Fly   321 NLFQSTYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYS 385
            ..::..|.::||.|||||||........:|:||..|...|.:..:...::......|:|.|||||
Mouse   338 TYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYS 402

  Fly   386 SHRAQSEKHVVVCS-TTLHADTIMDFLNEFYAHPLLQDFYVVL-----LSP-MELDTTM-RMILQ 442
            :  ....||:|||. .||  :::.:||.:| .|....|..|.:     :|| :||:... |...|
Mouse   403 A--VSGRKHIVVCGHITL--ESVSNFLKDF-LHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQ 462

  Fly   443 VPIWAQRVIYIQGSCLKDGDLARARMNEAEACFILAARNYADKTAADEHTILRSWAVKDFAPNVP 507
            |.       :.|||.|...||||.::..|:||.|||.:..||..|.|...|:|..::|::.|.:.
Mouse   463 VE-------FYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIR 520

  Fly   508 QYVQIFRPEHKLHV--------KFAEHVVCEDEFKYALLANNCTCPGASTLVTLLLHTSRGQEGQ 564
            ...|:.:..:|.|:        |..:..:|..|.|...:|.:|...|.||::..|.  |.....:
Mouse   521 IITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLF--SMRSFIK 583

  Fly   565 QSPEEWHRLYGKCSGNEIYHIVLGDSRFFGEYEGKSFTYASFHS-----HRKYGVALVGV--RPA 622
            ...:.|.:.|.:...||:|          .||...:|...||.:     ..|..:.::.:  :.|
Mouse   584 IEEDTWQKYYLEGVSNEMY----------TEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSA 638

  Fly   623 ELPEFYEETILLNPGPRHIMKKDDTC--YYMSITKEENSAFV---VNQNQTSDPTAAAKEGSGTG 682
            .......:.||:||| .|:..::.|.  :..|..||...||.   ...:..:||....|    .|
Mouse   639 NRESRSRKRILINPG-NHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDVTDPKRIKK----CG 698

  Fly   683 GGGGASSSASHHHTAATA---------NPTTTITTTVQATTTTISTTFTSSTLLSASTTTATINA 738
            ......|..|.:.....|         ...:.::..|:....|:..||..|::        ::|.
Mouse   699 CRRLIYSKMSIYKRMRRACCFDCGRSERDCSCMSGRVRGNVDTLERTFPLSSV--------SVND 755

  Fly   739 TSTAAAAPPPVPSVCVRVPHSPSYDSGGGTTGTTHLQPYPYPQSYPQPHPPMQTPDSGEFASLFV 803
            .||:..|                                     :....||              
Mouse   756 CSTSFRA-------------------------------------FEDEQPP-------------- 769

  Fly   804 PSENPTAVIISDSRQNLKDTTVTQTAATITTTTLPPPPQTMGSPSMAGGSGGCGGGGLGLGSAHS 868
                                            ||        ||.....:||             
Mouse   770 --------------------------------TL--------SPKKKQRNGG------------- 781

  Fly   869 MGTSLSITPATLTTTGNHLDVPFANNPNLLSPDVLNQRRGSRRPSILPVPDMFTSSSFSIAGNDD 933
                                  ..|:|| .||.::.     ..|.::|             |||.
Mouse   782 ----------------------MRNSPN-TSPKLMR-----HDPLLIP-------------GNDQ 805

  Fly   934 GEEGDESDDEIDDE--MPWRSPSE-----------KIACLGGHFPQSRTYSLIMSSSEDSYQRGC 985
            .:..|.:..:.|..  ..|.:|.|           .:..|.||        :::          |
Mouse   806 IDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGH--------VVV----------C 852

  Fly   986 SFCSATASASAAAVAVAVAAAPAPAPAPAYPSDSAGESGTNADSAAMPSEEYLPQLRRRV----- 1045
            .|    ...|:|.:.:.....|..|                       |..:..:|:..|     
Mouse   853 IF----GDVSSALIGLRNLVMPLRA-----------------------SNFHYHELKHIVFVGSI 890

  Fly  1046 --MKKSYSCDSECRSVPGMGMGMAMGVGLGGGTLARLAARRRQLQRCSSCSCSTATTTTTPAVAA 1108
              :|:.:   ....:.|.:.:       |.|..|:|...|...:..|..|               
Mouse   891 EYLKREW---ETLHNFPKVSI-------LPGTPLSRADLRAVNINLCDMC--------------- 930

  Fly  1109 TTAMAAGSGATAFTSSSSVETRRPVRPVWVYDYSCIVKGFPPVSPFIGVSPTLCYLLKEKKPLCC 1173
             ..::|.......||              :.|..||:...                         
Mouse   931 -VILSANQNNIDDTS--------------LQDKECILASL------------------------- 955

  Fly  1174 LQLAQVCEHCSYRNAKEYQWQNKTIILAADYASNGIYNFIIPLRAHFRSKTSLNPIILLLERRPD 1238
                         |.|..|:.:...:|.|:  |.|   |..|  ...||....:|:..:| |:|.
Mouse   956 -------------NIKSMQFDDSIGVLQAN--SQG---FTPP--GMDRSSPDNSPVHGML-RQPS 999

  Fly  1239 VAFLDALSYFPLVYWMLG-SIDCLDDLLRAGITLAESVVVVNKELSNSAEEDSLSDCNTIVAVQN 1302
            :.              .| :|..:.:|.:.|   ...:|.||:|.::...               
Mouse  1000 IT--------------TGVNIPIITELAKPG---KLPLVSVNQEKNSGTH--------------- 1032

  Fly  1303 MFKFFPSIKSITELSQSSNMRFMQFRAHD--KYALHLSKMEKREKERGSHISYMFRLPFAAGAVF 1365
                   |..||||...:|::|:.....|  ...|:|::                  |||.|..|
Mouse  1033 -------ILMITELVNDTNVQFLDQDDDDDPDTELYLTQ------------------PFACGTAF 1072

  Fly  1366 SASMLDTLLYQAFVKDYVITFVR------------LLLGIDQAPGSGFLTSMRITKDDMWIRT-- 1416
            :.|:||:|:...:..|.::|.:|            .|:..:.|...|:.|...:...|. .|.  
Mouse  1073 AVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDR-CRVAQ 1136

  Fly  1417 ----------------YGRLYQKLCSTTCEIPIGIYRTQDTSNADTSH------VSNSPVERWGP 1459
                            ||.|:.|...|...:..||||.:|...:..|.      ::|.|.|    
Mouse  1137 LALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYE---- 1197

  Fly  1460 FSAFSRHCVRLRPSYDEETG--------TPDSTKDSTEMLRGVTYRPPGSATGGASSFRPQPQRQ 1516
            |.......:.....:|...|        :..|::.|::....|...|..:........|....:|
Mouse  1198 FELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSQSSSKKSSSVHSIPSTANRPNRPKSRESRDKQ 1262

  Fly  1517 RSVNCLG-GCSERK------GSSYSINLADEARDNH-AQQIER 1551
            .:..... |.:|:|      .::|..|:..:....| |.||.:
Mouse  1263 NATRMTRMGQAEKKWFTDEPDNAYPRNIQIKPMSTHMANQINQ 1305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLO2NP_001097259.2 Ion_trans_2 297..363 CDD:285168 21/65 (32%)
BK_channel_a 524..619 CDD:281490 21/99 (21%)
Kcnma1XP_006518654.1 Ion_trans 179..396 CDD:366146 47/187 (25%)
NADB_Rossmann 410..523 CDD:389744 40/122 (33%)
BK_channel_a 545..633 CDD:367524 21/99 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842661
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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