DRSC/TRiP Functional Genomics Resources

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Protein Alignment smal and ddr-1

DIOPT Version :9

Sequence 1:NP_723165.2 Gene:smal / 5740323 FlyBaseID:FBgn0085409 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_508926.2 Gene:ddr-1 / 180817 WormBaseID:WBGene00016104 Length:766 Species:Caenorhabditis elegans


Alignment Length:627 Identity:173/627 - (27%)
Similarity:259/627 - (41%) Gaps:184/627 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 TTMAFDIATCNV-PLGMESLLITDAQITASSAHDMAFVGPQHARLKTDNDGGAWCPKHMVSNALK 132
            ||....|..|.. .|||::..|.|:||||||:.|...||||:|||.::...||||||..:::...
 Worm    15 TTNTLRIDQCGENALGMQNGDIADSQITASSSFDKQSVGPQNARLHSELASGAWCPKPQINSKSY 79

  Fly   133 EYLQVDLLQTHVITAIRTQGRYGKGQGQEYTEAYVLEYWRPGFDKWQRWKNIQGKEILPGNINTY 197
            |:|||.|..|.:||::.||||||.|.|:|:...|:::|.||| .:|.|:||..|...:.||.:|.
 Worm    80 EFLQVTLNDTFLITSVETQGRYGNGTGREFASHYMIDYLRPG-SQWIRYKNRTGHVYMDGNFDTT 143

  Fly   198 SEVENALQPIIFASKIRIYPYGQYDRTVCLRAEIVGCPWEEGIVSYS-IPKGVQRGMEVDLSDKT 261
            :.|...|.|.|.||:||..|..:..||||:||||.||. .||:..|| :|.| .|...:|..|..
 Worm   144 TPVIRVLDPPIVASRIRFVPSSKNTRTVCMRAEIHGCK-HEGVTYYSTVPDG-SRLDTLDFKDSM 206

  Fly   262 YDGN----EQGDRYVDGLGQLVDGQKGKDNFRTDIHGFGKGY---EWIGWRNDTPGLLGKPVEIV 319
            ::.:    |.|.:  .|||.|.||      |......|.|..   .||||..||..  |: :.|:
 Worm   207 FEDSQIYTESGIK--RGLGLLTDG------FVAQASPFEKNQMNNSWIGWNRDTTD--GR-ITIL 260

  Fly   320 FEFDTVRNFSAIVLHT--NNMFTKDVQVFVHAKVFFSIGGRYFSGEPVQFSYMP----DTIMDHA 378
            |||:.|.||:.:||.|  |.:...|        |.||..|:.|   |: ||.:.    .::.:.:
 Worm   261 FEFEEVHNFTDVVLATFGNRIDGID--------VIFSQDGKTF---PL-FSQISSSERQSLNNTS 313

  Fly   379 R--DVTIKLHHRVGKYLKINLYFAVKWIMLSEISFISVPAMGNFTDEQEQRSNSPSQAQDVHDET 441
            |  |..:.||:|.|:.::|::.|:..|:.|:|:.|.|...:...:::....|::.:|.       
 Worm   314 RRYDFRVPLHNRAGRKVRISIKFSSDWMFLTEVHFTSAANLTLLSEKIPPPSSAATQQ------- 371

  Fly   442 NGSEYQANRNKPNGVGGSAGGLGEGVAAAGGDIVGNNKYNNGPQLIAPRPIDQEPNDANFIGVVI 506
                                                                           ::
 Worm   372 ---------------------------------------------------------------LL 373

  Fly   507 VVLTTIIILLVAIILFIVSRTKRARGSNVLDAFQYSFNPNTLGGNVDK--------HRPNGNSIK 563
            ||...|.:.:.|.:.:.||...:.|..|           .::..||.|        ::|..:...
 Worm   374 VVCGIIFLTIFACVAYCVSVCLKRRQKN-----------KSVDSNVKKDLIITHMGNKPTCHVFP 427

  Fly   564 ANVDDNDSIGKNSLYHEPFNVNMYTCGVNGYAAVNDL-------------------QCN-MTPDY 608
            :|       ||.|..|              |...||:                   .|. :.|.:
 Worm   428 SN-------GKLSNGH--------------YEVANDILYARSQKSTLLSVSSKSTFSCRAIPPTW 471

  Fly   609 TDV-----PEGGYAVPHMQDYMPSSKMGGGAPGGGGYVNVRR 645
            ||.     |||.....:.|...|.:.      ..|.|.:||:
 Worm   472 TDFNFPPPPEGREEHTYSQPVSPENS------SNGSYKSVRK 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smalNP_723165.2 FA58C 78..234 CDD:214572 73/156 (47%)
FA58C 81..233 CDD:238014 72/151 (48%)
ddr-1NP_508926.2 FA58C 27..179 CDD:238014 72/152 (47%)
FA58C 34..180 CDD:214572 69/146 (47%)
Pkinase_Tyr 519..761 CDD:285015
PKc_like 525..762 CDD:304357
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 133 1.000 Domainoid score I3139
eggNOG 1 0.900 - - E1_KOG1094
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 277 1.000 Inparanoid score I1772
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122892at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4852
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R14052
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.860

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