DRSC/TRiP Functional Genomics Resources

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Protein Alignment smal and ddr1

DIOPT Version :9

Sequence 1:NP_723165.2 Gene:smal / 5740323 FlyBaseID:FBgn0085409 Length:939 Species:Drosophila melanogaster
Sequence 2:XP_002939505.1 Gene:ddr1 / 100488573 XenbaseID:XB-GENE-485346 Length:946 Species:Xenopus tropicalis


Alignment Length:662 Identity:200/662 - (30%)
Similarity:304/662 - (45%) Gaps:99/662 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TLCLWTLVIASGCLMLNAPTTMAFDIATCNVPLGMESLLITDAQITASSAHDMAFVGPQHARLKT 114
            :|..|..::.:.|:   |.....||.::|...|||:...|.|..||||||...: ...:|:||::
 Frog     8 SLLFWFNLLLALCI---AEPDAHFDPSSCRYALGMQDRTIPDEDITASSAWSDS-TEAKHSRLES 68

  Fly   115 DNDGGAWCPKHMVSNALKEYLQVDLLQTHVITAIRTQGRYGKGQGQEYTEAYVLEYWRPGFDKWQ 179
            ::..|||||...|....:|:|||||...|.:|.:.||||.|.|.|:|:...|.|.|.|.|| ||.
 Frog    69 NDGDGAWCPLGPVFPNYEEFLQVDLRNLHFLTLVGTQGRDGGGLGKEFARHYQLRYSRDGF-KWS 132

  Fly   180 RWKNIQGKEILPGNINTYSEVENALQPIIFASKIRIYPYGQYDRTVCLRAEIVGCPWEEGIVSYS 244
            :|::..|.|::.||.||:..|...|.|.|.|..:|.||......:||||.|:.||.|::|:.||:
 Frog   133 QWRDRWGNEVIEGNENTHDSVLKDLGPPIIARYVRFYPMADRVMSVCLRVELYGCIWQDGLRSYT 197

  Fly   245 IPKG---VQRGMEVDLSDKTYDGNEQGDRYVDGLGQLVDGQKGKDNF-RTDIHGFGKGYEWIGW- 304
            .|.|   ....|.::|:|.||||...|.....|||||.||..|.|:| :....|...||:::|| 
 Frog   198 SPPGNVMSLPSMLINLNDSTYDGFTVGGLQYGGLGQLTDGVIGADDFLQHKEQGVWPGYDYVGWM 262

  Fly   305 -RNDTPGLLGKPVEIVFEFDTVRNFSAIVLHTNNMFTKDVQVFVHAKVFFSIG-GRYFSGEPVQF 367
             .|...|.|    |:.||||.:|:|..:.:|.|||.:..:|:|.....:|... ...:..:||..
 Frog   263 TSNFPKGYL----EMEFEFDALRSFIYMRVHCNNMGSGGIQIFRRVDCYFKRSLHTPWDPQPVTL 323

  Fly   368 SYMPDTIMDHARDVTIKLHHRVGKYLKINLYFAVKWIMLSEISFISVPAMGNFTDEQE------- 425
            |...|.....||.|||.|..|..:.|:.:.||:.:|::||||||:|  .:.:.||.:|       
 Frog   324 SLALDVRDPSARSVTIALQGRAARILRCHYYFSSQWLLLSEISFLS--DILDATDPEEPSPLPPP 386

  Fly   426 QRSNSPSQAQDVHDETNGSEYQANRNKPNGVGGSAGGLGEGVAAAGGDIVGNNKYNNGPQLIAPR 490
            .::..|.:...:..:|...|..:.        |:...|...|..||.||..|            :
 Frog   387 MQTIPPPEVTSIPQDTTKRETTST--------GTTASLNGHVLEAGIDIRMN------------Q 431

  Fly   491 PIDQEPNDANFIGVVIVVLTTIIILLVAIILFIV--SRTKRARGSNVLDAFQYSFNPNTLGGNVD 553
            ||.::  |:....::|..|..||:||:.:|:.|:  .|.||..|.                   .
 Frog   432 PIAKD--DSGDTSILIGCLVVIILLLLVVIILILWRQRWKRLLGK-------------------A 475

  Fly   554 KHRPNGNSIKANVD-DNDSIGKNSLYH---EPFNVNMYTCGVNGYAAVNDLQCNMTPDYTDV--- 611
            :.||:.:.:.|::. ..|::..|:.::   .|.:.|.|...:.......:...|.....|.:   
 Frog   476 QRRPSDSDLTAHLSLPTDTVVINNTHNAPGPPRHANRYERIITSEGEYQEPSHNPRAKITTLSLS 540

  Fly   612 PEGGYAVPHMQDY--------MPSSKMGG--GAP---GGGGYVNVRRTPPPPLSSIFPRPPTVPP 663
            .||...:.:...|        .|.::.||  ..|   ..|||..: .||..|...    ||:|| 
 Frog   541 SEGAALLLNNPAYELLLTTYSRPITEHGGLQAKPINSQEGGYREL-ETPKLPACC----PPSVP- 599

  Fly   664 PPMEKYYATTAI 675
                 :||...|
 Frog   600 -----HYAEADI 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smalNP_723165.2 FA58C 78..234 CDD:214572 65/155 (42%)
FA58C 81..233 CDD:238014 64/151 (42%)
ddr1XP_002939505.1 FA58C 35..186 CDD:238014 64/152 (42%)
PTKc_DDR1 637..934 CDD:133227
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 150 1.000 Domainoid score I4343
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 525 1.000 Inparanoid score I1217
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122892at33208
OrthoFinder 1 1.000 - - FOG0001292
OrthoInspector 1 1.000 - - mtm9464
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X998
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.070

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