DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stacl and stac3

DIOPT Version :9

Sequence 1:NP_001260996.1 Gene:Stacl / 5740318 FlyBaseID:FBgn0263980 Length:1970 Species:Drosophila melanogaster
Sequence 2:NP_001007507.1 Gene:stac3 / 493233 XenbaseID:XB-GENE-5903818 Length:337 Species:Xenopus tropicalis


Alignment Length:498 Identity:107/498 - (21%)
Similarity:173/498 - (34%) Gaps:165/498 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   670 KAFKSLKPAGSGSAQQADSQPPRQNQMYHAVSTVLTLRRNGASSTASEPLRPNLDGSHHLQEYTY 734
            |..|..||:....||| :.:.|....:.:.:................||.||..|..|..:::..
 Frog     4 KKAKEEKPSPVPDAQQ-NGELPNSGPIIYYIYESEEEEEEEEEEPPPEPPRPVNDKPHKFKDHYL 67

  Fly   735 KKITACDVCSQILRGHTRQGLRCRICKLNAHGDCAPNLPRCQPKQKLLRRQKSTSELENRVDIEE 799
            ||...||||::::..:.:.||||:.||.|.|..|          |..:..||.            
 Frog    68 KKPKFCDVCARMIVLNNKFGLRCKNCKTNIHHHC----------QSYVEFQKC------------ 110

  Fly   800 ETGADKSVQAKQMDGSVAGGSALPVPVLSERELGRAPPPDIPIVSVSELALQEQQQQQQQQQQQH 864
                                            .|:.||           ..:..........||:
 Frog   111 --------------------------------FGKIPP-----------GFRRAYSSPLYSNQQN 132

  Fly   865 QQQQRSLASVAQAAAVRAGRGVRPPPVAMPI-LGVQLQQQELQQQRGGLPVPSQDISSSSAPHSP 928
                   |.|.:.....|..  |..||...: :||.:..:|.::.:.....|..:......|..|
 Frog   133 -------ACVKELMPFSASN--RTDPVFDTLRVGVIMANKERKKGQDDKKNPMLEEEPEELPPKP 188

  Fly   929 RRQKLNLRMKSLSLDSPESSELHGQFRRRTQLPGTGASTSAGSGYYHGGSGGHLEHSTPPSNNSR 993
            ..::..        |.|:                         |...|..||.            
 Frog   189 EEKQEG--------DVPD-------------------------GDKKGEKGGQ------------ 208

  Fly   994 LHSPSSPSHPGRKLLYATRGMRGGSVDLPDEMEKSQSSASTSPCLSPKTHRLLPTNLYVIIYNFK 1058
             .:.:..:.||                                        .:.::.:|.:|.||
 Frog   209 -DAKNKKAQPG----------------------------------------FMQSHYFVALYRFK 232

  Fly  1059 ARHADELDLKAGYKVTVIDNSDPDWWKGKVLGRVGYFPSKYCVRLNANEKPLQVTHNLQVSDSER 1123
            |...|:||.:||.::||||:|:.:||:|||..:.||||:.:.:|:.|.|:..:||.:. |.:.|.
 Frog   233 ALEKDDLDFQAGERITVIDDSNEEWWRGKVGEKAGYFPANFIIRVRAAERVYKVTRSF-VGNREI 296

  Fly  1124 GENLTLLRDQIVIQTGDEVNGMVMIRAAEHGQGYCPIKYLQEV 1166
            |: :||.:||||:|.||||||.:.:..... .|..|:.:|||:
 Frog   297 GQ-ITLKKDQIVVQKGDEVNGYIKVSTGRK-VGLFPLDFLQEI 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StaclNP_001260996.1 BAR 290..489 CDD:299863
C1 727..773 CDD:237996 16/45 (36%)
SH3 1051..1102 CDD:302595 24/50 (48%)
stac3NP_001007507.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..61 13/57 (23%)
C1_1 60..105 CDD:365894 17/54 (31%)
STAC2_u1 117..>165 CDD:374707 10/56 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..215 10/98 (10%)
SH3 224..276 CDD:388381 24/51 (47%)
SH3_Stac_2 283..333 CDD:212768 20/52 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10474
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48389
Panther 1 1.100 - - O PTHR15135
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1389
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

Return to query results.
Submit another query.