DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stacl and stac

DIOPT Version :9

Sequence 1:NP_001260996.1 Gene:Stacl / 5740318 FlyBaseID:FBgn0263980 Length:1970 Species:Drosophila melanogaster
Sequence 2:XP_001344470.4 Gene:stac / 100005402 ZFINID:ZDB-GENE-131121-459 Length:438 Species:Danio rerio


Alignment Length:588 Identity:119/588 - (20%)
Similarity:202/588 - (34%) Gaps:207/588 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   605 QLYNKVNELQEDLSMKKFDLRAK------QIHLAAIRAQKDLFVSKVEPTSPRNERKFSAATAPS 663
            |..:|:..|:..||.|...||:|      |..:..::.|.:|.......|...:....|...:|:
Zfish    32 QQESKLQRLKRSLSFKTKSLRSKSADNFFQRPIEDVKFQTELLSDVSSSTGHLSSIGVSVTASPA 96

  Fly   664 MKTKWLKAFKSLKPAGSGSAQQADSQPPRQNQMYHAVSTVLTLRRNGASSTASEPLR------PN 722
            |         ||.|           .||       .:.||:.   .....|...|.|      ||
Zfish    97 M---------SLPP-----------PPP-------PLPTVIP---GNLPITICSPSRAPRQTDPN 131

  Fly   723 LDGSHHLQEYTYKKITACDVCSQIL---RG--------HTRQGLRCRICKLNAHGDCAPNL--PR 774
               :|...|:.:||...||:|:.::   :|        :.:.||||:.||:..|..|...:  .|
Zfish   132 ---AHTFLEHIFKKPHFCDICNHMIVACQGGAGKVFGTNAKLGLRCKACKMGIHHKCLDGVGQQR 193

  Fly   775 CQPK-QKLLRRQKSTSELENRVDIEEETGADKSVQAKQMDGSVAGGSALPVPVLSERELGRAPPP 838
            |..| .|..||..|:..|     |:|:.|..:.|.      .:|.||.:. ||......|     
Zfish   194 CMGKLPKGFRRYSSSPLL-----IQEQFGCIREVM------PIACGSKVD-PVYETLRFG----- 241

  Fly   839 DIPIVSVSELALQEQQQQQQQQQQQHQQQQRSLASVAQAAAVRAGRGVRPPPVAMPILGVQLQQQ 903
                   :.||     |:.::.......|:.|.:.|||                           
Zfish   242 -------TSLA-----QKNKRTSGSESPQRNSTSDVAQ--------------------------- 267

  Fly   904 ELQQQRGGLPVPSQDISSSSAPHSPRRQKLNLRMKSLSLDSPESSELHGQFRRRTQLPGTGASTS 968
                      ||.:     .|.|..|.|.  :|..|.::..|..:                    
Zfish   268 ----------VPEE-----KAAHCSRAQL--IRKPSDNVFMPLEN-------------------- 295

  Fly   969 AGSGYYHGGSGGHLEHSTPPSNNSRLHSPSSPSHPGRKLLYATRGMRGGSVDLPDEMEKSQSSAS 1033
             |:.::|...                          ||.                |...|:....
Zfish   296 -GTEHFHVAE--------------------------RKA----------------EESLSERELK 317

  Fly  1034 TSPCLSPKTHRLLPTNLYVIIYNFKARHADELDLKAGYKVTVIDNSDPDWWKGKVLGRVGYFPSK 1098
            ..|.|         .|.||.::.|.|:...:|:::.|.::.:.|:|:.|||||.:..|:|:||:.
Zfish   318 RDPLL---------LNTYVALFGFTAQDNQDLEMRPGDRIVLADDSNDDWWKGVIEDRIGFFPAA 373

  Fly  1099 YCVRLNANEKPLQVTHNLQVSDSERGENLTLLRDQIVIQTGDEVNGMVMIRAAEHGQGYCPIKYL 1163
            :..::.::::..:..... :...|:|: :||...||.:...:|.||.:.: |:...:||.|...|
Zfish   374 FAHQVTSSDRVFRCNRTF-IGCKEQGQ-ITLKEGQICVSGENEHNGFIRV-ASGKKRGYVPCDVL 435

  Fly  1164 QEV 1166
            :.:
Zfish   436 ENI 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StaclNP_001260996.1 BAR 290..489 CDD:299863
C1 727..773 CDD:237996 16/58 (28%)
SH3 1051..1102 CDD:302595 17/50 (34%)
stacXP_001344470.4 C1 133..189 CDD:237996 16/55 (29%)
STAC2_u1 201..318 CDD:293269 37/252 (15%)
SH3_Stac_1 325..377 CDD:212767 17/51 (33%)
SH3 384..434 CDD:302595 13/52 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25075
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15135
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1389
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.010

Return to query results.
Submit another query.