DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vml and egr1

DIOPT Version :9

Sequence 1:NP_001096866.1 Gene:Vml / 5740271 FlyBaseID:FBgn0085362 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_571323.1 Gene:egr1 / 30498 ZFINID:ZDB-GENE-980526-320 Length:511 Species:Danio rerio


Alignment Length:500 Identity:113/500 - (22%)
Similarity:175/500 - (35%) Gaps:129/500 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLFLAAFGCLLANAFSLPATRNEEFDDGFPESEFDY-------EERHTREIPAQAYA----PPIV 59
            ::.|.:.|....||   .|.....|..|.|..:||:       |....:.:..|.|:    |||.
Zfish    35 MIMLNSAGTPFLNA---TAPEGAVFGSGEPGEQFDHLAGDTLSEISMEKPLSDQTYSTQRLPPIS 96

  Fly    60 YNSQSSYSPAKDQGYSAPAAPVYSPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAP 124
            |..:.:..||.:...|..|.|::|..:........|: |.|:  |.|....||       |.|..
Zfish    97 YTGRFTLEPATNCSNSLWAEPLFSLVSGLVGINPPPA-SIPS--STSQATHPS-------SSSTS 151

  Fly   125 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPS--YSA 187
            :.||.|:.::||.|...:...|.| .|.||  |||:||: ||......:.|::|.....|  ||:
Zfish   152 SIPSSSSSSTSSASLSCSVHQSEP-NPIYS--AAPTYSS-ASPDIFPESGPNFSTTVGTSLQYSS 212

  Fly   188 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPSAPSYSAQKTSSYSAPAAPSYHAPAA------ 246
            ...|| :....||:|.|..|.|......|..:...|.....:|.:...||....|...|      
Zfish   213 STYPS-AKTCNPSFSVPMIPDYLFTQQQSEISLVPPDQKPIQTQAGQQPALTPLHTIKAFATQTG 276

  Fly   247 --------------PASSYSAPAGPSYSAPAAPSYSAP--------------------------- 270
                          |:.....|..||.:.|....|:.|                           
Zfish   277 SQDLKSVYQSQLIKPSRMRKYPNRPSKTPPHERPYACPVETCDRRFSRSDELTRHIRIHTGQKPF 341

  Fly   271 -------SYSAPASSYSALKAPSYSAP-----------------------------AAPSYSAPA 299
                   ::|......:.::..:...|                             .|...:..|
Zfish   342 QCRICMRNFSRSDHLTTHIRTHTGEKPFACEICGRKFARSDERKRHTKIHMRQKDKKAEKGATAA 406

  Fly   300 APSYSSSASPSYSSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAA 364
            ..|..|:.|.|.|||. |||.:|..         ||.:|.: |:.:|....||:|..:||.:|:.
Zfish   407 VQSSVSNISISASSPV-SSYPSPIT---------SYPSPVS-SFPSPVNSCYSSPVHTSYPSPSI 460

  Fly   365 PSYSAPAAPSYSAPAAPSY-SAPASSSYSAPAA---PSYSAPAAP 405
            .:....|..::....|.|: ::.||:.||:|..   |...:..:|
Zfish   461 ATTYPSATSTFQTQVATSFPTSVASNIYSSPVTTPLPDMQSALSP 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmlNP_001096866.1 None
egr1NP_571323.1 DUF3446 99..185 CDD:288757 29/98 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..169 14/45 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 291..312 5/20 (25%)
zf-C2H2 311..335 CDD:278523 2/23 (9%)
C2H2 Zn finger 313..335 CDD:275368 1/21 (5%)
zf-H2C2_2 327..352 CDD:290200 0/24 (0%)
C2H2 Zn finger 343..363 CDD:275368 1/19 (5%)
zf-H2C2_2 355..380 CDD:290200 1/24 (4%)
C2H2 Zn finger 371..391 CDD:275368 0/19 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 384..406 1/21 (5%)
DUF3432 403..498 CDD:288743 31/105 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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