DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP1A and arhgap29a

DIOPT Version :9

Sequence 1:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster
Sequence 2:XP_693227.4 Gene:arhgap29a / 564805 ZFINID:ZDB-GENE-030131-9510 Length:1344 Species:Danio rerio


Alignment Length:1208 Identity:234/1208 - (19%)
Similarity:408/1208 - (33%) Gaps:412/1208 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 QQLSSSPKRETYMINTMPSS-----SSGSLCIDSLGNSLERNIKPSDILRQKS-SDNLDSKYSAK 380
            ||.|....:.:..:..:|.|     ||||   .|.|  |.|.:|...:....| |||:|:...| 
Zfish     8 QQSSGGLNKRSLGMARIPDSRFFPLSSGS---GSWG--LSRTVKSGSLSSISSGSDNMDNMMGA- 66

  Fly   381 RKTTPELSKFVNVNNPELMEELGRKMVSKADSLEQTRR--NDSSPSGCGSLGRTSSTPGRSLTPG 443
                          :|:.:.:|...:...||.|...:.  |......|                 
Zfish    67 --------------DPDYIMQLVNDVRRFADVLLHLKEAFNTKDHQDC----------------- 100

  Fly   444 RTGVGASPTGSLSKTGKLAMADSSSTSSLERRSCLQAVDADIGTESRESGANQRSVG--SKESLT 506
            ...|.....|.|.:..|..::...|.:|:|..|....:.|.:      .|.|.:.|.  :|::| 
Zfish   101 LHQVVHERLGELLRVLKAVISKHHSLNSVEILSAAGTLIAKV------KGVNYKEVNEDNKQTL- 158

  Fly   507 SQGISEVQIKSYESVSSLSSESAKAVAS------QQSAAAGGALAECEPYYDSVPLDNGDGEYVF 565
               .||:    |.|:.:|:......|:.      :..:|:|...|.....::::.|::|      
Zfish   159 ---FSEI----YTSIDTLAFTFGNVVSDFLMGDVENGSASGLPQASRSRSFENLTLESG------ 210

  Fly   566 IKPGRTGSSSSRDDLSTPGSSILPLPNVADPESPGRTSNYVNIDFFLQQGIETRSSSLDSDGEYE 630
                  |....:||  .||           |..|.|..                    ..||   
Zfish   211 ------GCGPEKDD--PPG-----------PSPPARVE--------------------QMDG--- 233

  Fly   631 GPPILRTISHDDQTTTQTTPGAIRKNLVSAILVCGNARGAKIRSILSSIIQSETIYVECLNKMMQ 695
              .:||:.|.                 |.:.|:...|.....:.:|:.:.:...:.:||...   
Zfish   234 --ALLRSDSG-----------------VESALLYAKAWSKYTKELLAWVDKRLNMDIECAKS--- 276

  Fly   696 YKKAIHATLTTSQPVIREEEENTIFFKIDELYDLHTGFLSDLKTIVSHEGGDVLIGEPFRRLAEM 760
                 :|.:..|...:..::|:.                                  |||     
Zfish   277 -----YAKMAESAKALASQQEHM----------------------------------PFR----- 297

  Fly   761 FDLY-SAFLHNYKNAIETVKKCSANNPQFKKIVSTIVLNLQTEQSLTLEDLLHKPVARV----QI 820
             |:| |||    :|.||           :.:::      :||..:|.....:....||.    ::
Zfish   298 -DIYISAF----RNDIE-----------YSQLI------MQTTAALQANKFMQPLQARKSELDKL 340

  Fly   821 NALVFNDLLRETPNAHPDHQPLRQAQKIIQMFLNQF--------NVVNQRLPIESNRNL--RRMV 875
            ...|.....||....|.....||:|:.:......::        .|..:::.....:.|  ||.:
Zfish   341 RKEVKEQWQREQKKMHEADSALRKARLLQAQRQEEYEKARSSTSRVEEEQISGAGGKQLEKRRKL 405

  Fly   876 RNSFIV--ELVDGHRKLRHLFLFNDV------IACAKYKALGRDR-----IDYELK-----WF-- 920
            ....::  |....|.||    ...||      :|..|.:.|.:.|     .|..||     ||  
Zfish   406 EEEALLKAEEAQDHYKL----CVTDVGVKRVDLAKTKSEILTQIRELVFQCDLTLKAVTVNWFQM 466

  Fly   921 -------IPLKDVSIYEEA---DPAV---ELKESSPANISQVKRNLRSVRDQLAMEVANSGSGAF 972
                   :|:...|:.|.:   :|.:   |..:|.|::.|:|        :..:.:::::.:...
Zfish   467 QQAQVASLPINFQSLCENSKLYEPGLCYTEFVKSLPSDRSRV--------ESFSFDISSTHNTGL 523

  Fly   973 RSGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPG 1037
            :              :.|.:||..::.|..          :|.||.....::|.:..: ...:|.
Zfish   524 K--------------RAVNSTPAALVHLSQ----------VSGDFLSADEVESHVQAR-TAKMPD 563

  Fly  1038 ANTINSLEVTAFIV--------------AMQKGMKTEMGSYLMRNTNDESLLVGDLYMGVHGLEG 1088
            ..:.::.:|.|..:              .|....::..||...|:.:..:...||....:.....
Zfish   564 GRSHSTTDVQALRIQGPFRVWRTSSQGGGMCSDSESAGGSSESRSMDSPTASPGDFKRRLPRTPS 628

  Fly  1089 ---LEQANDL---------------YICVEVDSYG-------------HYFRKATTKKICRSQTP 1122
               :..|:||               .:.....|.|             |..||......||....
Zfish   629 TGTMSSADDLDEREPPSPSDNGLSEMVTEAASSPGPFRNTQMSKAAQTHKLRKLRAPSKCRECDS 693

  Fly  1123 LWNESFMLELEGSQNVRILLYEAKERPLLKAKHILKLSLSWLTETTQPKSIKLTETLELGCSFRF 1187
            |      :...|:        |.:|..|...|                   |..|||.:.|..:.
Zfish   694 L------VVFHGA--------ECEECSLACHK-------------------KCLETLAIQCGHKK 725

  Fly  1188 IPGELFRGSTKPGALFGAKMSQVLKREKRDIPFIIGACIREVERRGMLEVGCYRVSGSASDLAKL 1252
            :.|:|.        ||....:|..|.....|||||..|..|:|.|.:...|.|||:|:.|.:.||
Zfish   726 LQGKLH--------LFAIDFAQAAKNSPDGIPFIIKKCTSEIENRALNIKGIYRVNGAKSRVEKL 782

  Fly  1253 KKAFES--DAYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRI 1315
            .:|||:  |..|    |.::..|.::.:||.:||:|||.|.   |: |:::.|...:..::|..:
Zfish   783 CQAFENGKDLVE----LSDLYPHDISNVLKLYLRQLPEPLI---LF-RYYNDFIGLAKESQSIIV 839

  Fly  1316 NE----------------------LLKV---FEELPQANKASITSILDHLIRVHEKETDNKMSLH 1355
            :|                      |.|:   ..:||.|:..::..::.||.||.|:..:|||:..
Zfish   840 DEVEASRGCPTSDTPQISVELNRVLFKIKDLLRQLPPAHYKTLQFLIQHLHRVSERADENKMTSS 904

  Fly  1356 NLAMVFGPTLLRPGQTQVKQKDPLAASTVDVMAQAGIL 1393
            ||.::|||||::|.|...:..   .:|.||...||.|:
Zfish   905 NLGIIFGPTLIKPRQADAEVS---LSSLVDYPYQALIV 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619 29/194 (15%)
PH_BCR_arthropod 851..1037 CDD:270174 36/228 (16%)
C2 1079..1187 CDD:301316 21/138 (15%)
RhoGAP 1203..1398 CDD:295372 68/218 (31%)
arhgap29aXP_693227.4 BAR 230..484 CDD:299863 58/348 (17%)
C1 675..721 CDD:197519 15/78 (19%)
RhoGAP 733..945 CDD:295372 68/218 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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