DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP1A and chin-1

DIOPT Version :10

Sequence 1:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster
Sequence 2:NP_497323.3 Gene:chin-1 / 175268 WormBaseID:WBGene00015267 Length:421 Species:Caenorhabditis elegans


Alignment Length:442 Identity:98/442 - (22%)
Similarity:157/442 - (35%) Gaps:140/442 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1014 SSDFERTQWIDSILSLKQKCNLPGA-------------------NTINSLEVTAFIVAMQKGMKT 1059
            ||...:..|..::..|::|...|.|                   ..|:..|....:      ::.
 Worm     9 SSGASKGYWKQNLYLLQEKAPKPNAVLCRKPLQQRPRHFGAEFHGLIDRNEAEKML------LEA 67

  Fly  1060 EMGSYLMRNTNDE-----------------------------------SLLVGD----LYMGVHG 1085
            ..||||:|.:|..                                   .|||.|    :::.:|.
 Worm    68 GEGSYLVRESNRSRDACTLCMIFDAKVMNYKLYYDGQFYVGEKRFDTMDLLVADGLISMFVDLHA 132

  Fly  1086 LEGLEQANDLYICVEVDSYGHYFR-KATTKKICRSQTPLWNESFMLELEGSQNVRILLYEAKERP 1149
            .:.:::..|..| .|...|..|.. .|||..|.|                             ||
 Worm   133 ADYIKRMADEAI-YEDSPYSRYTNAAATTSDIVR-----------------------------RP 167

  Fly  1150 LLKAKHILKLSLSWLTETTQPKSIKLTETLELGCSF--RFIPGELFRG----------------- 1195
            :.:|.:....:..      .|..          |.:  .|:.|.:.:|                 
 Worm   168 VTRAHNFTSYTFK------APHY----------CDYCRNFLWGLVHQGMRCEDCGFAAHKKCSEK 216

  Fly  1196 --------STKPGALFGAKMSQVLKREKRDIPFIIGACIREVERRGMLEVGCYRVSGSASDLAKL 1252
                    |.....:||..::.:......|:|.|:..||.|||.||:...|.||||||...:.||
 Worm   217 TLHDCVPDSKYVKRMFGVDITTLCMAHGADLPPIVPLCIGEVESRGLDVEGIYRVSGSYDHMEKL 281

  Fly  1253 KKAFESDAYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRINE 1317
            |:.|:|:.|  ..|....|||:|.|:||.:.|.||:.|....::.:....:...:..:...|..:
 Worm   282 KQQFDSNQY--VDLATVCDIHTVCGLLKLYFRLLPQQLIPFSVHKQLLVAYQETNQRSTHERERQ 344

  Fly  1318 LLKVFEELPQANKASITSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRPG 1369
            :.||..||..||..::.::|.||.:|.:....|||::.|||.:|.|||...|
 Worm   345 IRKVMMELSDANIITLGAVLAHLKKVADHSAKNKMTVENLATIFSPTLFCSG 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619
PH_BCR_arthropod 851..1037 CDD:270174 5/22 (23%)
C2 1079..1187 CDD:472691 16/110 (15%)
RhoGAP 1203..1398 CDD:470621 59/167 (35%)
chin-1NP_497323.3 SH2_a2chimerin_b2chimerin 43..130 CDD:198215 12/92 (13%)
C1_CHN 171..223 CDD:410356 6/67 (9%)
RhoGAP 248..413 CDD:238090 56/151 (37%)
Blue background indicates that the domain is not in the aligned region.

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