DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP1A and CHN2

DIOPT Version :9

Sequence 1:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster
Sequence 2:XP_016867210.1 Gene:CHN2 / 1124 HGNCID:1944 Length:575 Species:Homo sapiens


Alignment Length:497 Identity:116/497 - (23%)
Similarity:199/497 - (40%) Gaps:111/497 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   914 DYELKWFIPLKDVSIYEEADPAV------ELKESSPANISQVKRNL--RSVRDQ----------- 959
            ||:|     |:|.   ||..|.:      :|::.:|    :.||.:  |.|.::           
Human   118 DYKL-----LEDA---EEYQPPIWKSYLYQLQQEAP----RPKRIICPREVENRPKYYGREFHGI 170

  Fly   960 LAMEVANSGSGAFRSGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWID 1024
            ::.|.|:...|........|      |||.......|.||.||:..|..: |.....|...:..:
Human   171 ISREQADELLGGVEGAYILR------ESQRQPGCYTLALRFGNQTLNYRL-FHDGKHFVGEKRFE 228

  Fly  1025 SILSLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDESLLVGDLYMGVHGLEGL 1089
            ||..|                ||..::.:.  ::|:...|:.:.|                    
Human   229 SIHDL----------------VTDGLITLY--IETKAAEYISKMT-------------------- 255

  Fly  1090 EQANDLYICVEVDSYGHYFRKATTKKICRS-----QTPLWNESFMLELEGSQNVRILLYEAKERP 1149
              .|.:|   |...|....|:..::::.||     :|.:.:|......:.|..||.......:..
Human   256 --TNPIY---EHIGYATLLREKVSRRLSRSKNEPRKTNVTHEEHTAVEKISSLVRRAALTHNDNH 315

  Fly  1150 LLKAK-HILKL-------------SLSW--LTETTQPKSIKLTETLELGCSFRFIPGELFRGSTK 1198
            ....| |..|:             :..|  :.:..:.....|  .:...|| :.:|.:......:
Human   316 FNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGL--NVHKQCS-KHVPNDCQPDLKR 377

  Fly  1199 PGALFGAKMSQVLKREKRDIPFIIGACIREVERRGMLEVGCYRVSGSASDLAKLKKAFESDAYEA 1263
            ...::...::.::|......|.::..||||:|.||:...|.|||||....:..:|.||:.|..:|
Human   378 IKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKA 442

  Fly  1264 EQLLREV--DIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRINELLKVFEELP 1326
            : :...|  ||:.:||.||.:.|:||..:.|...|.:|.|. :..||.:|  |:..:.:|...||
Human   443 D-ISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDA-AKISNADE--RLEAVHEVLMLLP 503

  Fly  1327 QANKASITSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRP 1368
            .|:..::..::.||.:|...|.||.|:..||.:||||||:||
Human   504 PAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRP 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619
PH_BCR_arthropod 851..1037 CDD:270174 32/141 (23%)
C2 1079..1187 CDD:301316 19/128 (15%)
RhoGAP 1203..1398 CDD:295372 59/168 (35%)
CHN2XP_016867210.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.