DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clos and Tspear

DIOPT Version :9

Sequence 1:NP_001097246.3 Gene:clos / 5740204 FlyBaseID:FBgn0261016 Length:1836 Species:Drosophila melanogaster
Sequence 2:NP_001274003.1 Gene:Tspear / 252974 MGIID:2671932 Length:670 Species:Mus musculus


Alignment Length:455 Identity:100/455 - (21%)
Similarity:170/455 - (37%) Gaps:159/455 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 SYPTHFLNSDQESMLHKRATAVPQFFDQASFSFD----------GLERVASVPVSFPLDICILQL 82
            :||   ..:|.:..|..|......  :.|.|.||          |.|.|:.:.....||.     
Mouse   261 NYP---YEADMKVTLGSRPPCTKA--EGAQFWFDAAQKGLYLCAGSEWVSVLAAKTKLDY----- 315

  Fly    83 PTVKYATALHKNAAGVRHFAVYTWRPAEQDYQLLVELETPKAVALDCLAFAGRGYVAVSYNLTEP 147
              |:...:||.|:                           :.:.::..:..|.|..|.:.|    
Mouse   316 --VEEHQSLHTNS---------------------------ETLGIEVFSIPGVGLFAAAAN---- 347

  Fly   148 VSQAREGSPIYE------ISPETGIRTVQYFSGTHL---RGMYLRISS-------QELTLLHAFE 196
             .:||  |.||:      :|.: .|.|.|..|..|.   :.::|.:::       ||.:::    
Mouse   348 -RKAR--SAIYKWTDGKFVSYQ-NIATHQAQSWRHFTIGKKIFLAVANFGPNERGQEFSVI---- 404

  Fly   197 SNAQCPYFKWMGKS-----FQRLGAIHCSKARRMEAFGIDYTDYVAVANYADAEGRTATHSEIFR 256
                   :||..:.     :||: |.|  .||..|||.:|...::.|||:.:.:... ..|.::|
Mouse   405 -------YKWSPRKLKFTLYQRI-ATH--SARDWEAFEVDGEHFLVVANHREGDNHN-IDSMVYR 458

  Fly   257 WDAKSQRFQLFQRLRSNGAVDVKYFSLPVNEVSRRHFLILGNTIGGTGAEVGDADTVIYVFEKGQ 321
            |:..||.|:..|.:.::||.|.::|:     |....||::.||..||..:|   .:.:|::..|.
Mouse   459 WNPSSQLFEANQSIATSGAYDWEFFT-----VGPYSFLVVANTFNGTSTQV---HSHLYIWLVGA 515

  Fly   322 FVPYQR-LSFYALERVLPVQHSISEKFLLLVA-CNKQDVK-------------IYNLN------- 364
            |..:|. |:|.|.:  ..|.| |.|:..|.|| .:..||:             ||.||       
Mouse   516 FQLFQSFLTFGAAD--WEVFH-IGERIFLAVANSHSYDVQMQAQNDSYVLSSVIYELNITAQTFV 577

  Fly   365 -----------DWRFEESKVQFTEGALSRGVARMRSYEEGDQSYLVIANENMAANETNIFQPLYK 418
                       ||.|                     :..|:..:||:|| :...|..::...:|:
Mouse   578 KFQDIPTCSALDWEF---------------------FSVGEDHFLVVAN-SFDGNTFSVNSIIYR 620

  Fly   419  418
            Mouse   621  620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
closNP_001097246.3 EPTP 263..315 CDD:281697 14/51 (27%)
TspearNP_001274003.1 LamG <84..223 CDD:304605
EAR 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 314..359 14/85 (16%)
EAR 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 361..409 11/59 (19%)
EPTP 361..408 CDD:281697 10/58 (17%)
EAR 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 413..461 16/51 (31%)
EPTP 413..460 CDD:281697 15/50 (30%)
EAR 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 465..513 15/55 (27%)
EPTP 466..511 CDD:281697 15/52 (29%)
EAR 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 515..571 17/58 (29%)
EPTP 516..>546 CDD:281697 12/32 (38%)
EAR 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 575..623 10/68 (15%)
EPTP 576..621 CDD:281697 10/67 (15%)
EAR 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 626..669
EPTP 626..666 CDD:281697
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849230
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto94148
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15261
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

Return to query results.
Submit another query.